Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq461 102 7e-17 seq3426 86.0 6e-12 seq1199 86.0 6e-12 seq21 82.4 7e-11 >seq461 Length=5900637 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || || |||||||| | || ||||| || Sbjct 2469864 ATGCAAATTTTTGTCAAGACCCTGACTGGTAAGACGATCACATTGGAGGTTGAGAGCTCG 2469923 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || ||| | ||||||||||||| | || || ||||| Sbjct 2469924 GACACCATCGATAATGTGAAGTCAAAGATTCA-GGACAAGGAAGGCATCCCTCCTGACCA 2469982 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || || ||||| || ||||| || | |||| || ||||| || Sbjct 2469983 GCAAAGGCTGATCTTTGCCGGCAAGCAATTGGAGGATGGAAGGACTCTGGCTGATTACAA 2470042 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || ||| |||| || || ||||||| || Sbjct 2470043 TATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCAGGTTGAGGGGTGG 2470090 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || ||| |||||| || || || ||||| |||| || || || ||||| |||| || | Sbjct 2468716 AACCAATCATGCAGATCTTTGTTAAGACCTTGACTGGAAAGACCATCACTCTCGAGGTAG 2468775 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 | || |||| |||| | || || || ||| | ||||||||||||| | || Sbjct 2468776 AGAGCTCTGACACCATCGACAATGTAAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCC 2468834 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAG 31362 || ||||||||| | | || || ||||| || || |||||||| | | | || | Sbjct 2468835 CCTGACCAGCAGAGATTGATTTTTGCTGGAAAGCAATTGGAAGA-TGGACGTACACTTGC 2468893 Query 31363 CGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| || || || || || || || || || || || || ||||| |||| Sbjct 2468894 TGATTATAACATCCAGAAGGAGTCCACACTCCACCTTGTCCTCAGGCTCAGGGGTGGTA 2468952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || || ||||| |||||| | || ||||| || Sbjct 2468952 ATGCAGATCTTTGTTAAAACCCTAACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCT 2469011 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || || ||| || ||||||||||||| | || || ||||| Sbjct 2469012 GACACCATAGACAATGTAAAGGCAAAGA-TACAGGACAAGGAAGGCATTCCCCCTGACCA 2469070 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | |||| || ||||| || || ||||| || ||| | || ||||| Sbjct 2469071 GCAGAGATTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTGCTGACTATAA 2469130 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| ||||| || || || || || || || || || || ||||| || Sbjct 2469131 CATCCAAAAGGAGTCCACACTCCACCTTGTCCTCAGGCTCAGGGGTGG 2469178 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || || || || || || || |||||| | || || || || Sbjct 2469179 CATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACAATCACCCTTGAGGTCGAGAGCTC 2469238 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | || || | || |||||||||||| | || ||||| || Sbjct 2469239 AGATACTATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGATCA 2469298 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || ||||| || |||||||| || | ||| | ||||| || Sbjct 2469299 GCAAAGGCTCATCTTTGCTGGGAAGCAGTTGGAGGATGGTCGCACTCTTGCAGATTACAA 2469358 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||| || || || ||||| |||| || || || | ||||| Sbjct 2469359 CATTCAAAAGGAGTCTACCCTTCACTTGGTGCTCAGGCTTCGAGGCGG 2469406 >seq3426 Length=3004207 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 || || ||||| || ||||| || || || || || || || || ||| | || || || Sbjct 2138988 TCGAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTTGAGGTCGAG 2139047 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || || | || || | ||||| | || |||||| || ||| | || || Sbjct 2139048 AGCTCTGATACAGTTGACAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCA 2139107 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GA 31365 || ||||| || || || ||||| ||||||||| | ||||| | || | ||| || Sbjct 2139108 GATCAGCAACGCCTCATCTTCGCAGGCAAACAGCTTGAAGA-TGGCCGAACACTAGCTGA 2139166 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| |||||||||||||| || ||||| || || || Sbjct 2139167 TTACAATATCCAGAAGGAATCTACTCTTCATCTGGTTCTGAGACTCAGAGGAGG 2139220 >seq1199 Length=7341449 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || |||||||| || || || ||||| || || || | || || || Sbjct 1127870 AAGATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGC 1127811 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | |||| | ||||| | ||| |||||| || ||| | || || || Sbjct 1127810 TCCGATACGATCGACAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGAT 1127751 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG-ATTA 31368 || || || || || ||||| || || ||| | ||||| || | |||| |||| Sbjct 1127750 CAACAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCT-AGCGGATTA 1127692 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| ||||||||||||||||| || ||||| || || || Sbjct 1127691 CAATATCCAGAAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGAGGAGG 1127641 >seq21 Length=3941259 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| |||| ||||| || || ||| | || |||||| || Sbjct 1372215 CATGCAAATTTTCGTCAAGACCTTGACTGGCAAGACCATTACCCTGGAGGTTGAAAGCTC 1372274 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || | ||| |||||||| || | || || ||||| Sbjct 1372275 AGATACAATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAGGGTATTCCCCCTGACCA 1372334 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | ||||| || ||||| |||||| | || || | ||| | || ||||| Sbjct 1372335 GCAAAGGCTAATTTTTGCTGGTAAACAGCTTGAGGATGGAAGGACCCTTGCTGACTATAA 1372394 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || ||||| || |||||||| |||| Sbjct 1372395 TATCCAGAAAGAGTCTACTCTTCACTTGGT 1372424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445734382828320