Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq922 199 5e-46 >seq922 Length=8123900 Score = 199 bits (220), Expect = 5e-46 Identities = 413/612 (67%), Gaps = 2/612 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || ||||| ||||| | ||| || ||||| ||| | ||| ||||| || || | Sbjct 2994039 CAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAA 2993980 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||| || | ||||| ||||||||||||||| || || ||||||||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAG 2993920 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33761 || ||||| || ||||| ||||| | |||||| || || | | || ||| Sbjct 2993919 ATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATTGATC 2993860 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || ||| | ||||| || || || || ||||| || | |||||| | || | || Sbjct 2993859 CATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAAC 2993800 Query 33822 AGATAGtttttt-tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 | || | | || ||| | ||| || | |||| || | ||| || || ||||| || Sbjct 2993799 A-ATCGACTCTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATCTC 2993741 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 || || |||||||||||||| ||||| || || |||||| |||||||| | || || Sbjct 2993740 AGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACTTG 2993681 Query 33941 CACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAA 34000 || || | ||||| | || | |||||| ||||| |||||| |||||||| Sbjct 2993680 AACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCAAA 2993621 Query 34001 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 34060 || || | ||||| |||| || | |||||| | | || || || ||| | | Sbjct 2993620 GAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTGCTG 2993561 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 | |||| ||| | ||| || ||||| | ||||| || || |||||||| || ||||| Sbjct 2993560 AAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTTATA 2993501 Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 34180 ||| | ||| || | |||||| || || || || ||||| || || || | || Sbjct 2993500 CATCTCCCAAATTTGGGGATATTTTATGGGAAACATGCAAAATCGATCAGGGTTCGAAGC 2993441 Query 34181 AAGGATAGGTTC 34192 ||| | ||||| Sbjct 2993440 AAGAAGGGGTTC 2993429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629772363350880