Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq922 150 2e-31 seq557 100 3e-16 >seq922 Length=8123900 Score = 150 bits (166), Expect = 2e-31 Identities = 380/574 (66%), Gaps = 3/574 (1%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||||||||| ||||||||||| ||||| || ||||||||||| || ||||| Sbjct 2994039 CAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAA 2993980 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||| || || | |||||||| ||||||||| | | ||| |||||||||||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAG 2993920 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATC 11809 || || || ||| ||||| || | | || ||| || | | | | ||| Sbjct 2993919 ATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATTGATC 2993860 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 |||||| ||||| || ||||| || || || | ||||| | ||| | || Sbjct 2993859 CATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAAC 2993800 Query 11870 AAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 || | | || || | ||| | | || | || | || | || ||||| || Sbjct 2993799 AATCGACTCTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATCTCA 2993740 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 || || || ||||| || || || || || ||||||||| | ||||||| | || Sbjct 2993739 GAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACTTGA 2993680 Query 11990 ACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048 || ||| ||| |||| |||| | || ||| || ||||||||| || |||||| Sbjct 2993679 ACCTCCTTCAT-GAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCAAA 2993621 Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATC 12108 || || || | ||| |||| |||| |||||| | ||| | |||||| | | Sbjct 2993620 GAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTGCTG 2993561 Query 12109 TAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATA 12168 | |||| || | ||| || |||||| | ||||| ||| ||| ||| || ||||| Sbjct 2993560 AAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTTATA 2993501 Query 12169 CATTTTCCAGATATCATGATACTTAATAGGGAAA 12202 ||| | ||| || | |||| || || |||||| Sbjct 2993500 CATCTCCCAAATTTGGGGATATTTTAT-GGGAAA 2993468 >seq557 Length=6368207 Score = 100 bits (110), Expect = 3e-16 Identities = 92/115 (80%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 11619 TAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAG 11678 || ||| ||||| |||||||||||||||| ||| || ||||| || |||||||| | Sbjct 1405737 TATACAACAAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCG 1405796 Query 11679 AAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAA 11733 | || |||||||| |||||||| ||||| ||||| | |||||| || ||| |||| Sbjct 1405797 AGAAGGTTAATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAATGGCA-CAAA 1405850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468491148206240