Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq922 187 3e-42 >seq922 Length=8123900 Score = 187 bits (206), Expect = 3e-42 Identities = 395/587 (67%), Gaps = 2/587 (0%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || ||||| ||||||| ||| || ||||| ||| | ||| || || || || | Sbjct 2994039 CAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAA 2993980 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||||| || | ||||| |||||||||||||| ||| ||||||||||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAG 2993920 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATC 36337 || ||||| || ||||| ||||| | |||||| || || || | || ||| Sbjct 2993919 ATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATTGATC 2993860 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 || ||| | ||||| || || || || ||||| || | || || | ||| | || Sbjct 2993859 CATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAAC 2993800 Query 36398 AGATAG-tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 | || | | || ||| | ||| || | || | |||| ||| || || ||||| || Sbjct 2993799 A-ATCGACTCTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATCTC 2993741 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 || || |||||||||||||| || || || || |||||| |||||||| | || || Sbjct 2993740 AGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACTTG 2993681 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 || || | ||||| | || | |||||| ||||| || ||| |||||||| Sbjct 2993680 AACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCAAA 2993621 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATT 36636 || || | ||||| |||| || | |||||| | || || || ||| | | Sbjct 2993620 GAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTGCTG 2993561 Query 36637 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 36696 | |||| ||| | ||| || ||||| | ||||| || || |||||||| || ||||| Sbjct 2993560 AAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTTATA 2993501 Query 36697 CATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 36743 ||| | ||| || | |||||| || ||||| || ||||| || Sbjct 2993500 CATCTCCCAAATTTGGGGATATTTTATGGGAAACATGCAAAATCGAT 2993454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658125526738640