Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq461 109 5e-19 seq1199 100 3e-16 seq21 93.3 4e-14 seq3426 91.5 1e-13 >seq461 Length=5900637 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||||||||| | | | || ||||||| |||||||| ||||||||||| ||||| Sbjct 2469407 GCCGCCTCGAAGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGC 2469348 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || | ||| || |||||| |||| || | ||||||||||||||| Sbjct 2469347 AAGAGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGG 2469288 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || |||| | || | || || | | ||| || Sbjct 2469287 GATCCCTTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGAC 2469228 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| || || | ||||| ||||| |||||||| Sbjct 2469227 CTCAAGGGTGATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2469180 >seq1199 Length=7341449 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTG 139620 |||| || |||||||| || || || ||||| ||| | || | ||||||||||| Sbjct 1127665 TGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCT-AGGGTTCGGCCATCTTCGAGCTG 1127723 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||| || |||| || ||||| ||||| || |||||||| |||||||| |||||| Sbjct 1127724 CTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGTATGCCCTCTTTGTCCTGGATTTT 1127783 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | || |||| | ||| ||||||| || | |||||||| || Sbjct 1127784 GGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACCTCAAGAGTAATGGTCTTGCCAGT 1127843 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| || ||||| Sbjct 1127844 TAGGGTTTTTACGAAGATCTGCAT 1127867 >seq21 Length=3941259 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| ||||||||||| || || ||||| || | || || || || Sbjct 1372424 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCA 1372365 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| | || || | |||||| || || || || || || ||||| || Sbjct 1372364 AGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTC-TTG 1372306 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| | || | | || | ||| || | | || ||||| | ||| | ||||| Sbjct 1372305 AATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTT 1372246 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| || || ||||| |||||||| Sbjct 1372245 GCCAGTCAAGGTCTTGACGAAAATTTGCAT 1372216 >seq3426 Length=3004207 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTG 139620 |||| ||||| || || || || || ||||| ||| | ||| | ||||| ||||| Sbjct 2139196 TGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT-AGTGTTCGGCCATCTTCAAGCTG 2139138 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| || || |||| || ||||||||||| || || ||||| |||||||| ||| || Sbjct 2139137 TTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCCTGGATCTT 2139078 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || ||||| || | | ||| ||||||| ||| | ||||| || || Sbjct 2139077 GGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACCTCAAGGGTAATGGTCTTACCCGT 2139018 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 2139017 TAGGGTTTTCACGAAGATCTGCAT 2138994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496028370203200