Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq922 154 1e-32 seq557 104 2e-17 >seq922 Length=8123900 Score = 154 bits (170), Expect = 1e-32 Identities = 575/881 (65%), Gaps = 33/881 (4%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| ||||| | ||| || || |||||||| ||||| || || | |||||| || | Sbjct 2994330 TTTTGGTATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAGTGAAATGAGT 2994271 Query 13641 TCCATAAAATCAAATGGATTTATTGA--CATAAACACTTTATCACAACCTAG----TTCT 13694 ||||| |||||||||| ||| ||| | | | | ||||||||| || | ||| Sbjct 2994270 TCCATCCAATCAAATGGGTTT--TGAACCCCATAGATTTTATCACACCCCAAAGCATTC- 2994214 Query 13695 AATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13754 || || |||||||| | ||| || || || || ||| | || | ||||| || Sbjct 2994213 AACAGC---CTATCAGCCACAAATTCGATGTACTGGCTCATCAGATTGCCGTTCATTCCC 2994157 Query 13755 ATTAGTTTTACAGGA-ATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTT 13813 | ||| ||||| | || | ||||||| | ||||| |||| || | Sbjct 2994156 ACTAGAGC-ACAGGGCAAGGCATCACAAACAAATTCTCTCTCTATCTCTACAGATTCCCT 2994098 Query 13814 TATAATAATTGTAATAATCTCATTAGAAGGAGGATAT--TTTAGATGTTTAAAAATTAAA 13871 || ||| || || | | | || |||| | | |||||| | | | | | | Sbjct 2994097 TACTATATTTTGAACGCTTTGTTGAG--GGAGCTTGTGGTTTAGAAGATCATAGAGAAGG 2994040 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| || | || |||||||| ||| ||||| || || || ||||| Sbjct 2994039 CAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAA 2993980 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| || || | |||||||| ||||||||| | | ||| || |||||||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAG 2993920 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || || ||||| ||||| || || || | ||| |||| ||| | || Sbjct 2993919 ATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATT---G 2993863 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||||||| ||||| || | |||||| || | | | ||||||| ||| | Sbjct 2993862 ATCCATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTG 2993803 Query 14112 AATAA-ATATTCCT-TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 || || | || | || || | | |||| ||||| | |||| | | ||| |||| Sbjct 2993802 AACAATCGACTCTTCTCACTGGAATCCTTG--ATGTAAGATTCAAGCAAGAGGCTGTACA 2993745 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTCCGAC 14228 | |||||||| |||||||| || || ||||| || ||||| ||||| ||||| || | Sbjct 2993744 TCTCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGC-CCTAGCCTCTGCA 2993686 Query 14229 CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 ||| || ||| |||| | || | |||||| |||||||||||| |||| Sbjct 2993685 ACTTGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCT 2993626 Query 14289 GCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14346 ||||| || || | | ||| || || |||| || || || |||| | || Sbjct 2993625 GCAAAGAAAGCAAGGACATGGGTT--ATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCC 2993568 Query 14347 AAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 | | | || | || | ||| ||||| || || ||| | ||||| ||| || | ||| Sbjct 2993567 AGTGCTGA-AGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCT 2993509 Query 14406 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 || |||||||| |||| |||| |||| ||| ||||| Sbjct 2993508 TTCTTATACATCTCCCAAATTTGGGGATATTTTATGGGAAA 2993468 >seq557 Length=6368207 Score = 104 bits (114), Expect = 2e-17 Identities = 88/107 (82%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| |||||||||||||| || ||||||||||| |||||||| || || || ||| Sbjct 1405745 AAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCGAGAAGGTT 1405804 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 ||||| |||||||| ||||| ||||| | |||||| || ||| |||| Sbjct 1405805 AATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAATGGCA-CAAA 1405850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479693543536400