Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq922 158 1e-33 seq557 104 2e-17 >seq922 Length=8123900 Score = 158 bits (174), Expect = 1e-33 Identities = 569/877 (65%), Gaps = 25/877 (3%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||| ||||| | ||| || || ||||| || ||||| || || | |||||| || | Sbjct 2994330 TTTTGGTATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAGTGAAATGAGT 2994271 Query 13429 TCCATAAAATCGAATGGATTTGTTGA--CATAAACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| ||||| ||| ||| | | | | ||||||||| || | | | Sbjct 2994270 TCCATCCAATCAAATGGGTTT--TGAACCCCATAGATTTTATCACACCCCAAAGCATTCA 2994213 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | | |||||||| | ||| || || || || ||| | || | ||||| || | || Sbjct 2994212 ACAGCCTATCAGCCACAAATTCGATGTACTGGCTCATCAGATTGCCGTTCATTCCCACTA 2994153 Query 13547 GTTTTACAGGA-ATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 13605 | ||||| | || | | ||||||| | ||||| |||| || ||| Sbjct 2994152 GAGC-ACAGGGCAAGGCATCACAAACAAATTCTCTCTCTATCTCTACAGATTCCCTTACT 2994094 Query 13606 ATAATCTTAATAATGTCATTAGAAGGAGGATAT--TTTAGATGTTTAAAAATTAAACACG 13663 ||| | | || | | | || |||| | | |||||| | | | | | | || | Sbjct 2994093 ATATTTTGAACGCTTTGTTGAG--GGAGCTTGTGGTTTAGAAGATCATAGAGAAGGCAAG 2994036 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 |||||||||| || | || |||||||| ||| ||||| || || || ||||| || | Sbjct 2994035 CAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAACCAG 2993976 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 13783 |||| || || | |||||||| ||||||||| | | || || |||||||| || | Sbjct 2993975 GCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAGATAC 2993916 Query 13784 CCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCC 13843 | ||||| ||||| || || | | ||| |||| ||| | || |||| Sbjct 2993915 CTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATT---GATCC 2993859 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 ||||| ||||| || | |||||| || | | | ||||| | || |||| | Sbjct 2993858 ATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAACA 2993799 Query 13904 AATGTTCCTTCT--CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 13961 | | ||||| || | | |||| ||||| | |||| | | ||| ||||| || Sbjct 2993798 ATCGACTCTTCTCACTGGAATCCTTG--ATGTAAGATTCAAGCAAGAGGCTGTACATCTC 2993741 Query 13962 AGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14021 |||||| |||||||| || || ||||| || ||||| ||| ||||| |||| ||| Sbjct 2993740 AGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACTTG 2993681 Query 14022 TACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 |||||| |||| | || | ||||||| || ||||||||| ||||||||| Sbjct 2993680 AACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCAAA 2993621 Query 14082 AAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14139 || || | | ||| || || |||| || || || |||| | ||| | Sbjct 2993620 GAAAGCAAGGACATGGGTT--ATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGT-- 2993565 Query 14140 GCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 ||| || || | ||| ||||| || || ||| | ||||| ||| || | ||||| | Sbjct 2993564 GCTGAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCT 2993505 Query 14198 TATACATTACCCATATTTCTTTATATAATATAGGAAA 14234 ||||||| |||| |||| |||| ||| ||||| Sbjct 2993504 TATACATCTCCCAAATTTGGGGATATTTTATGGGAAA 2993468 >seq557 Length=6368207 Score = 104 bits (114), Expect = 2e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||| |||||||||||||| || ||||||||||| |||||||| || || || ||| Sbjct 1405745 AAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCGAGAAGGTT 1405804 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 ||||| |||||||| ||||| ||||| | |||||| || ||| Sbjct 1405805 AATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAATGGCA 1405846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478554425359440