Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq922 181 1e-40 >seq922 Length=8123900 Score = 181 bits (200), Expect = 1e-40 Identities = 409/612 (67%), Gaps = 2/612 (0%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || ||||| ||||| | ||| |||||||| ||| | ||| || || || || | Sbjct 2994039 CAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAA 2993980 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||||| || | ||||| ||||||||||| || ||| |||||||||||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAG 2993920 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATC 42244 || ||||| || ||||| ||||| | |||||| || || || | || ||| Sbjct 2993919 ATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATTGATC 2993860 Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304 || ||| | ||||| || || || || ||||| || | |||||| | || | || Sbjct 2993859 CATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAAC 2993800 Query 42305 AGATAG-tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 | || | | || ||| | ||| || | || | || | ||| || || ||||| || Sbjct 2993799 A-ATCGACTCTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATCTC 2993741 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || |||||||||||||| ||||| || || |||||| || ||||| | ||| || Sbjct 2993740 AGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACTTG 2993681 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || || | ||||| | || | ||||| ||||| || ||| |||||||| Sbjct 2993680 AACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCAAA 2993621 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 || || | ||||| |||| || | |||||| | | || | || ||| | | Sbjct 2993620 GAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTGCTG 2993561 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 | |||| ||| | ||| || ||||| | ||||| || || || ||||| || ||||| Sbjct 2993560 AAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTTATA 2993501 Query 42604 CATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 42663 ||| | ||| || | |||||| || || || || ||||| || || || | || Sbjct 2993500 CATCTCCCAAATTTGGGGATATTTTATGGGAAACATGCAAAATCGATCAGGGTTCGAAGC 2993441 Query 42664 AAGGATCGGTTC 42675 ||| | ||||| Sbjct 2993440 AAGAAGGGGTTC 2993429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671090995426960