Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq461 109 4e-19 seq3001 93.3 3e-14 seq3275 87.8 1e-12 seq21 82.4 6e-11 >seq461 Length=5900637 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| ||||| || | || ||||| |||||||| || || || || |||||||| Sbjct 2470092 TGCCACCCCTCAACCTGAGGACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAG 2470033 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | || || ||||| ||||| || | |||| | ||| ||||| | Sbjct 2470032 CCAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAG 2469973 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| ||| || ||| ||| | || ||||| || | || | Sbjct 2469972 GGATGCCTTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCCGAGCTCTCAA 2469913 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || || || ||||| ||||| || || ||||||||||||||| Sbjct 2469912 CCTCCAATGTGATCGTCTTACCAGTCAGGGTCTTGACAAAAATTTGCATA 2469863 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || || |||||||| || | ||| | ||||| | || Sbjct 2470295 ATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCTTCAAGCTG 2470236 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | || | | || ||||| ||| || || || ||||| |||||| Sbjct 2470235 CTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTT 2470176 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || ||||||||| | || || || | ||||||||| || || || Sbjct 2470175 CGCCTTGACATTGTCAATGGTATCGGAGCTCTCCACCTCAAGGGTAATGGTCTTTCCAGT 2470116 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || |||||||| ||||| Sbjct 2470115 AAGAGTCTTAACAAAAATCTGCAT 2470092 >seq3001 Length=2574463 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || | || | |||||||||||| || || ||||| |||||||| Sbjct 511768 CCACCTCTCAACCTCATCACAAGATGAAGGGTGGATTCCTTCTGTATATTGTAATCAGCA 511709 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| | | || |||| ||| |||||||| |||||| | ||||||||| ||| Sbjct 511708 AGAGTTCGCCCATCATCTAGTTGCTTGCCAGCAAATATCAGTCTTTGTTGGTCAGGAGGA 511649 Query 15257 ATTCCTTCTTTGTC 15270 ||||| || || || Sbjct 511648 ATTCCCTCCTTATC 511635 >seq3275 Length=3666727 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || || || | || ||||||| | || || ||||| |||||||| | Sbjct 2666508 CCACCTCTCAACCTCAACACAAGATAAAGGGTGCATTCCTTCTGTATATTGTAATCAGTA 2666567 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| | | || | || ||| |||||||| |||||| | |||||||| ||| Sbjct 2666568 AGAGTTCACCCATCCTGTAGTTGCTTGCCAGCAAATATCAGTCTCTGTTGGTCAGGAGGA 2666627 Query 15257 ATTCCTTCTTTGTCACAA 15274 ||||| || || || ||| Sbjct 2666628 ATTCCCTCATTATCCCAA 2666645 >seq21 Length=3941259 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || || || ||||| || ||||| || || || || ||||| ||| || | | | Sbjct 1372657 CTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCA 1372598 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 || || | ||||||||||| | || | | || ||||| || ||||| || || Sbjct 1372597 TCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCCTTA 1372538 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||||| ||| || | || || ||||| | || || || ||||||||| Sbjct 1372537 TCTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACCTCCAAGGTAATG 1372478 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||| ||||| |||||||||||||| Sbjct 1372477 GTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362153836816986