Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq21 105 6e-18 seq461 86.0 5e-12 seq3426 84.2 2e-11 >seq21 Length=3941259 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| || | ||| ||||||| || | || |||||||| || |||||||| || | Sbjct 1372671 TTCCTCCACGGAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGG 1372612 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| |||||||| || ||| ||||||| |||||||| || | Sbjct 1372611 CAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCG 1372552 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCC 18991 | | ||||| || || |||||| || || | | | ||||| | || ||| Sbjct 1372551 GGATTCCCTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTATC-CGAGCTCTCA 1372493 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||| || || || || |||||||||||||||||||| Sbjct 1372492 ACCTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | ||||| ||| | || ||||||||||| ||||||||||| || Sbjct 1371986 CCCCCACGAAGCCTGAGCACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCA 1371927 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | ||||| || || ||||| ||| | || || ||||||||||| ||| Sbjct 1371926 AGAGTTCTGCCATCCTCAAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGG 1371867 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | ||||| || || ||| || || || | ||| ||| || | || ||| Sbjct 1371866 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTATCGATAGTGTC-CGAGCTCTCGAC 1371808 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||||| || || || | || |||||||| || ||||| Sbjct 1371807 CTCAAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 >seq461 Length=5900637 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || ||||||||||| || | || | | || || ||||| || || Sbjct 2470288 GTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCTTCAAGCTGCTTCCCA 2470229 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || |||||||| || || | |||||| ||||| ||||||| || Sbjct 2470228 GCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTTCGCCTTG 2470169 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | |||||| |||| || | ||||||||| || || || | ||| Sbjct 2470168 ACATTGTCAATGGTATCGGAGCTCTCCACCTCAAGGGTAATGGTCTTTCCAGTAAGAGTC 2470109 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 2470108 TTAACAAAAATCTGCAT 2470092 >seq3426 Length=3004207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||| || ||||||||||| || | |||| | | || || |||||||| || Sbjct 2139190 GTAGATTCCTTCTGGATATTGTAATCAGCTAGTGTTCGGCCATCTTCAAGCTGTTTGCCT 2139131 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | |||||||| || | |||||||||||| || || || Sbjct 2139130 GCGAAGATGAGGCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTG 2139071 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTTTTACCTGTTAAA 19021 || | | | || |||| ||| |||| || || | ||||||||| ||||| |||| Sbjct 2139070 ACATTGTCAACTGTAT---CAGAGCTCTCGACCTCAAGGGTAATGGTCTTACCCGTTAGG 2139014 Query 19022 GTTTTGACAAAAATTTGCATTTT 19044 ||||| || || || |||||||| Sbjct 2139013 GTTTTCACGAAGATCTGCATTTT 2138991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414543767725924