Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq21 118 9e-22 >seq21 Length=3941259 Score = 118 bits (130), Expect = 9e-22 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| || | ||||||||||||||| ||||| || || || || || ||||| ||| Sbjct 1372671 TTCCTCCACGGAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGG 1372612 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACG 20098 | | || ||| || | |||||||| ||| ||||||||||||| || || | || Sbjct 1372611 CAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCG 1372552 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TC 20157 || | || || || || |||||| ||||| | ||| | ||| | || | || Sbjct 1372551 GG-ATTCCCTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTATC-CGAGCTCTC 1372494 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 1372493 AACCTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419557816570626