Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq922 163 2e-35 >seq922 Length=8123900 Score = 163 bits (180), Expect = 2e-35 Identities = 572/881 (65%), Gaps = 29/881 (3%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| ||||| | ||| || || ||||| || || || || || | | ||||| | Sbjct 2994330 TTTTGGTATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAGTGAAATGAGT 2994271 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTTTTACACCCTAATTCTAGTA 12977 ||||| |||| || || |||| |||| |||| ||| | |||||| || | | Sbjct 2994270 TCCATCCAATCAAATGGGTTTT--GAACCCCATAGATTTTATCACACCCCAAAGCATTCA 2994213 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 ||| || ||||| ||||| || |||||||| |||| | || | ||||||||| | || Sbjct 2994212 ACAGCCTATCAGCCACAAATTCGATGTACTGGCTCATCAGATTGCCGTTCATTCCCACTA 2994153 Query 13038 ATTTTACAGG-CATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 ||||| || || || | ||| | | | ||||| || || | ||| | ||| Sbjct 2994152 GAGC-ACAGGGCAAGGCATCACAAACAAATTCTCTCTCTATCTCTACAGATTCCCTTACT 2994094 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT--AGATGCTTAAACATCATACATG 13154 || | | | | | || | | | |||| | || | ||| | | | | | | || | Sbjct 2994093 ATATTT-TGAACGCTTTGT-TGAGGGAGCTTGTGGTTTAGAAGATCATAGAGAAGGCAAG 2994036 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 ||||||||||||| || ||||||||||| || || || || || || |||| ||| | Sbjct 2994035 CAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAACCAG 2993976 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| | || | |||||| | ||||||||| | | ||| ||| ||||| || || | Sbjct 2993975 GCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAGATAC 2993916 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTA-CTCTCTATC 13333 ||||||| ||||| || |||||||| || || | | ||| | | ||| Sbjct 2993915 CTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAG----ATTCAGAGGAATTGATC 2993860 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || ||| ||||||| |||||||| ||| ||| | |||| | || | || Sbjct 2993859 CATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAAC 2993800 Query 13394 AAATAAtttttttCCTTACTG---TCTAAAATATAAGTATCTATCAATAAGCTATACATT 13450 || | | || || |||| || || |||| || | ||| | ||| ||||| Sbjct 2993799 AATCGACTCTT---CTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATC 2993743 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 || || || || ||||| || || || ||||| ||||| ||| |||||||||| || Sbjct 2993742 TCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACT 2993683 Query 13511 TGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 ||||| || |||| | || | |||||| ||||| || ||| ||| ||| Sbjct 2993682 TGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCA 2993623 Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCA 13626 || |||||||| | || | || || | |||||| | | || || ||| Sbjct 2993622 AAGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAA----TCCCA 2993567 Query 13627 ATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTT 13686 | ||| |||| || | ||| ||||| ||| | ||||| ||||| || | || || Sbjct 2993566 GTGCTGAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTT 2993507 Query 13687 CTTATACATCATCCATATATCCTTATAAACAATGGGAAACA 13727 |||||||||| ||| || | ||| |||||||||| Sbjct 2993506 CTTATACATCTCCCAAATTTGGGGATATTTTATGGGAAACA 2993466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430952218571892