Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq21 167 5e-36 seq461 158 3e-33 seq3426 152 1e-31 seq922 150 4e-31 seq2419 109 1e-18 >seq21 Length=3941259 Score = 167 bits (184), Expect = 5e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| | ||||| || || | |||| ||| || || || || ||||| || ||| Sbjct 1371989 ATCCCCCCACGAAGCCTGAGCACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCA 1371930 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | |||||||| || || || ||||| || |||||||| || |||||||| |||||||| Sbjct 1371929 GCAAGAGTTCTGCCATCCTCAAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGG 1371870 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || ||||| || |||||||||||||| || || ||||| || | || || | || | || Sbjct 1371869 GGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTATCGATAGTGTC-CGAGCTCTC 1371811 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| ||||| || || || ||||| |||||||| Sbjct 1371810 GACCTCAAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 Score = 143 bits (158), Expect = 6e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| | ||||| || || | ||| | ||||| |||||||| || || ||||| Sbjct 1372217 ATGCCCCCACGAAGCCTGAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCG 1372158 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | ||| || || ||||| || |||||||||||||| || || || |||||| Sbjct 1372157 GCAAGAGTCCGACCATCCTCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGA 1372098 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || || |||||||| || || || || || | || || || | || Sbjct 1372097 GGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATAGTGTC-AGAGCTCTC 1372039 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| ||||| || || || ||||| |||||||| Sbjct 1372038 GACCTCGAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 134 bits (148), Expect = 3e-26 Identities = 171/233 (73%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| | ||||| || | || || | ||||| |||||||| |||||||||||| Sbjct 1372444 ATGCCCCCACGAAGCCTGAGACCAAG-TGAAGAGTAGACTCTTTCTGGATATTATAGTCA 1372386 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || || || || || || ||||| ||||||||||||||||| || || ||||| Sbjct 1372385 GCAAGGGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGG 1372326 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGT 104506 || || || || || || ||||| || || || || || || | ||||| ||| | Sbjct 1372325 GGAATACCCTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCT---T 1372269 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| ||||| ||||| | || || || || || ||||| Sbjct 1372268 TCAACCTCCAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 1372216 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||||| | || | ||| | ||| || || ||||| ||||| ||||| Sbjct 1372672 ATTCCTCCACGGAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCG 1372613 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || ||||| ||||||||||| |||||||| || ||||| Sbjct 1372612 GCAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGC 1372553 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || ||||| || ||||| ||||| || || || || || || | ||||| | || | || Sbjct 1372552 GGGATTCCCTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTATC-CGAGCTCTC 1372494 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||| ||||| ||||| | ||||| ||||| || ||||| Sbjct 1372493 AACCTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 >seq461 Length=5900637 Score = 158 bits (174), Expect = 3e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || || || | ||| || || || || || ||||||||| Sbjct 2469181 ATGCCACCCCTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTATAGTCA 2469122 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | || || || | ||| |||||||||||||||| ||||| || ||||| Sbjct 2469121 GCAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGG 2469062 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||| |||||||| |||||||| |||| ||| || || | || Sbjct 2469061 GGAATGCCTTCCTTGTCCTGTATCTTTGCCTTTACATTGTCTATGGTGTC-AGAGCTCTC 2469003 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || ||||| || ||||| ||||| |||||||| Sbjct 2469002 AACCTCCAGGGTGATGGTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 Score = 158 bits (174), Expect = 3e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| | ||||| || || | || | || || || || ||||| || ||||| Sbjct 2469865 ATACCCCCACGAAGCCTGAGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCC 2469806 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | ||| || |||| ||| || ||||| || || ||||||||||| || ||| Sbjct 2469805 GCGAGAGTACGACCATCCTCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGA 2469746 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||| |||||||| || ||||| || | |||||| | || | || Sbjct 2469745 GGGATCCCTTCCTTGTCCTGGATCTTTGCCTTGACATTATCAATGGTATC-CGAGCTCTC 2469687 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 2469686 AACCTCCAGGGTAATGGTCTTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 149 bits (164), Expect = 1e-30 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || || || | ||| || || ||||| || ||||| ||| Sbjct 2468953 ATACCACCCCTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCA 2468894 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || ||||| | ||| |||||||||||||| | ||||| || ||||| Sbjct 2468893 GCAAGTGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCAGGG 2468834 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||| |||||||| |||||||| || | ||| || || | || Sbjct 2468833 GGGATGCCTTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGATGGTGTC-AGAGCTCTC 2468775 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || ||||| ||||| | || || ||||| |||||||| Sbjct 2468774 TACCTCGAGAGTGATGGTCTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 2468724 Score = 140 bits (154), Expect = 7e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || | ||| || || | ||| | || || || ||||| ||||| || ||| Sbjct 2470093 ATGCCACCCCTCAACCTGAGGACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCA 2470034 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| || || || || | ||| || || ||||| || ||||| || || |||||| Sbjct 2470033 GCCAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGA 2469974 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||||||||||| || ||||| || | ||| || | || | || Sbjct 2469973 GGGATGCCTTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTC-CGAGCTCTC 2469915 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||||||||| || || || ||||| || ||||| Sbjct 2469914 AACCTCCAATGTGATCGTCTTACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| | |||||||| || ||||| | ||| || || ||||||||||||||||| Sbjct 2469637 ATACCCCCACGAAGCCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCG 2469578 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || ||||| | ||| || || |||||||| | ||| || || ||||| Sbjct 2469577 GCGAGGGTACGGCCATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGG 2469518 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||| ||||| || || ||||| || | || || | || Sbjct 2469517 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAACTCTCA 2469458 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || || |||||||| || || || ||||| || ||||| Sbjct 2469457 ACCTCCAAAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTGCAT 2469408 >seq3426 Length=3004207 Score = 152 bits (168), Expect = 1e-31 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || ||||| | |||||||| ||||| ||||| || |||| | Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||| || ||||| || ||||| || || || || || | || ||||| || || Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTAC 104511 || || ||||| ||||| ||||| || || ||||| || || ||||| || | || || Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAG-AGCTCTCGAC 2139042 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || ||||| |||||||| || || ||||| || || ||||||||||| Sbjct 2139041 CTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2138991 >seq922 Length=8123900 Score = 150 bits (166), Expect = 4e-31 Identities = 389/593 (66%), Gaps = 0/593 (0%) Strand=Plus/Plus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750 ||||| ||| ||||| || ||||| ||| | || | || ||| |||||| || Sbjct 2993447 AACCCTGATCGATTTTGCATGTTTCCCATAAAATATCCCCAAATTTGGGAGATGTATAAG 2993506 Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810 | || | || ||||| ||||||| ||||| || ||||| ||| | ||| | | Sbjct 2993507 AAAGCAGAGGCCTCTTTCTGGACTGCTGAAGAGGTCGATCTCTCTCAAGACCTTCAGCAC 2993566 Query 268811 TGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870 ||| | | | | | | |||| | || ||| | || | ||||| || |||||| Sbjct 2993567 TGGGATTCTCTCACTTCTGGGGAAAAACACTTCATAACCCATGTCCTTGCTTTCTTTGCA 2993626 Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATT 268930 | | ||||||||| || ||||| || | | ||| | ||||| || || Sbjct 2993627 GCTTCTGATGGTATAGTCCTTGAAAACCTTGCGGGTCGATTCATGAAGGAGGTTCAAGTT 2993686 Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990 | || || || ||| || || |||||||| || || ||||| || || || |||||| Sbjct 2993687 GCAGAGGCTAGGGCTTTCTATGGCTTCCAGATCGCCATTGAAAACATCCACTCTGAGATG 2993746 Query 268991 TACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCT 269050 ||||| || || | || |||| || | ||| || || |||| || | || Sbjct 2993747 TACAGCCTCTTGCTTGAATCTTACATCAAGGATTCCAGTGAGAAGAGTCGATTGTTCAGG 2993806 Query 269051 TCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC 269110 || | ||| | |||||| |||||| | || ||||| || |||||||| || Sbjct 2993807 GCTGTTGAAACGGTTCCCTGTGTTGCCAAAAAAGCAGACTGGGCGCTAAAATGGATCAAT 2993866 Query 269111 GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 | ||| | ||| ||||| ||||||||||| ||| |||||||| |||||| Sbjct 2993867 TCCTCTGAATCTTTTGCAGAGAGGTTGATTGCTTTTGCCTGTGTTGAAGGTATCTTCTTT 2993926 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 || || |||| | || |||||| | || ||||| || | ||||| || ||||| Sbjct 2993927 TCTGGTAGTTTTTGTTCCATATTTTGGCTAAAAAAAAGGGGTTTAATGCCTGGTTTAACC 2993986 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 |||||||| ||| | || || || |||||||||||||| || || ||||| Sbjct 2993987 TTCTCTAATGAACTCATTTCAAGAGATGAAGGTTTACACTGTGATTTTGCTTG 2994039 >seq2419 Length=5026 Score = 109 bits (120), Expect = 1e-18 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || ||||||||||| || | | ||| || ||||| || ||||| || Sbjct 4929 CCATCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGGGGGATTCCCTCC 4870 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 ||||| || ||||| || || ||||| || | ||| || | || | || ||||| || || Sbjct 4869 TTATCTTGGATCTTAGCCTTAACATTGTCAATGGTGTC-CGAGCTCTCAACCTCAAGAGT 4811 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| || ||||| || || ||||| |||||||| Sbjct 4810 AATAGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 4772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151313633330168