Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq915 116 2e-21 seq1923 109 3e-19 seq3275 107 1e-18 seq630 107 1e-18 seq453 107 1e-18 seq2236 105 3e-18 seq2604 104 1e-17 >seq915 Length=848007 Score = 116 bits (128), Expect = 2e-21 Identities = 88/104 (85%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCT 11485 ||||| | ||||||| |||| ||| | ||||||||| | | |||||||| |||||| Sbjct 154344 AAATAAATAATTAATTTAAAACCAATTCAATGGCCCATGCAGGTCTCGAACCTGCGACCT 154403 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 154404 TCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 154447 >seq1923 Length=9414115 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| || ||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 6583107 TAAAATATAGTATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 6583048 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 6583047 CGCTCTAACCAACTGAGCTAATAGGCC 6583021 >seq3275 Length=3666727 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 2883967 TAAAAAACCCA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 2883910 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 2883909 CGCTCTAACCAACTGAGCTAATAGGCC 2883883 >seq630 Length=6709877 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4044460 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4044519 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 4044520 TGAGCTAATAGGCCGT 4044535 >seq453 Length=4878105 Score = 107 bits (118), Expect = 1e-18 Identities = 77/88 (88%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | | |||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 1628811 ATAAAAAGT-ATTTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACG 1628869 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 1628870 ACGCTCTAACCAACTGAGCTAATAGGCC 1628897 >seq2236 Length=3568992 Score = 105 bits (116), Expect = 3e-18 Identities = 76/88 (86%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11445 AAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| | ||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 1826540 AAAAATTACATTCATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 1826481 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 1826480 ACGCTCTAACCAACTGAGCTAATAGGCC 1826453 >seq2604 Length=5143656 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4310988 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4311047 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 4311048 TGAGCTAATAGGCC 4311061 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261472887934696