Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3426 127 2e-24 seq21 125 6e-24 seq461 122 8e-23 seq1199 109 5e-19 seq2419 98.7 9e-16 >seq3426 Length=3004207 Score = 127 bits (140), Expect = 2e-24 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCT 94839 |||||||| | || || |||| || | |||||||||||| || | || ||||| ||| Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 |||||| | ||| || |||||||| || | ||||| | | |||||||||||| Sbjct 2139160 ---AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGT 2139104 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || || |||||||| | || || |||||||| | | || || |||| | ||| Sbjct 2139103 GGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCG 2139044 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| || ||||| || || || || |||||||| ||||||||||| Sbjct 2139043 ACCTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2138994 >seq21 Length=3941259 Score = 125 bits (138), Expect = 6e-24 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 |||||| || | |||||| || || || | ||| || ||| || || || || |||| Sbjct 1372197 CACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGG-CA-AGAGTCCGACCATCC 1372140 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || || || || |||| |||| ||||||||| || ||||||||||| || ||||| Sbjct 1372139 TCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCT 1372080 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| || ||||| ||| | | | |||||||| | ||||| || | || ||||| Sbjct 1372079 TGAATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTC 1372020 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || || || |||||||||||||| Sbjct 1372019 TTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || |||||||| | || ||||| | ||| || |||||| Sbjct 1371969 CACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTGCCATCCTC 1371910 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || ||||||| | || |||||||| || || || || || || || | Sbjct 1371909 AAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCCTTATCCTG 1371850 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||||| || ||| |||||| | | ||||| |||| || ||||| || Sbjct 1371849 AATCTTGGCCTTCACATTATCGATAGTGTCCGAGCTCTCGACCTCAAGAGTAATGGTCTT 1371790 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || |||||||||||||| Sbjct 1371789 CCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 >seq461 Length=5900637 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | |||||| || | ||| | |||||||| || ||||| Sbjct 2469148 GTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGGCCATCCTCCAATTGCTTTCCA 2469089 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| |||||||| ||||| || || ||||| ||||| ||||| | || |||||||| Sbjct 2469088 GCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTTGCCTTT 2469029 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | | ||||||| | || || || | ||||||||||| ||||| || ||| Sbjct 2469028 ACATTGTCTATGGTGTCAGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTTAGGGTT 2468969 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 2468968 TTAACAAAGATCTGCAT 2468952 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||||| |||||||| | ||| ||||| | |||| |||||| Sbjct 2469389 CACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCAAGAGTGCGACCATCCTC 2469330 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || ||||||| | ||||||||||| ||||| || ||||| ||||| | Sbjct 2469329 CAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGGATCCCTTCCTTGTCCTG 2469270 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || | | | ||| || | | ||||| |||| ||||| || || Sbjct 2469269 GATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACCTCAAGGGTGATTGTCTT 2469210 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || ||||| || ||||| ||||||| Sbjct 2469209 CCCAGTTAGGGTTTTGACGAAGATTTGCATGC 2469178 Score = 104 bits (114), Expect = 2e-17 Identities = 147/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || || ||||| || | ||||||||| || ||||| | ||| |||| || |||| Sbjct 2468920 GTGGACTCCTTCTGGATGTTATAATCAG-CA-AGTGTACGTCCATCTTCCAATTGCTTTC 2468863 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | |||| || ||||| ||||| || || || || ||||| ||||| | || ||||||| Sbjct 2468862 CAGCAAAAATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCT 2468803 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | ||| ||||||| | || || || | |||||||| |||||||| | | Sbjct 2468802 TTACATTGTCGATGGTGTCAGAGCTCTCTACCTCGAGAGTGATGGTCTTTCCAGTCAAGG 2468743 Query 94989 TTTTCACAAAGATCTGCATGCTT 95011 | || ||||||||||||||| || Sbjct 2468742 TCTTAACAAAGATCTGCATGATT 2468720 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || || ||||||| | || ||||| ||||| || || || || || Sbjct 2470247 ATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTT 2470188 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| |||||||| | | | || || | | || || |||| || || Sbjct 2470187 GTCCTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCACCTCAAGGGTAAT 2470128 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| |||||||||||||| || ||||| |||||||||| Sbjct 2470127 GGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCATGC 2470090 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | || || |||||||| | ||| || || | | || || || ||||| Sbjct 2469844 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTC-CGCG-AGAGTACGACCATCCT 2469787 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | | || || || | ||||| | || || || || ||||| || ||||| ||||| | Sbjct 2469786 CTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCCT 2469727 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || ||||||||||| | | || || | | || || || | || ||||| | Sbjct 2469726 GGATCTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATGGTCT 2469667 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| || ||||| |||||||||||||| Sbjct 2469666 TTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 >seq1199 Length=7341449 Score = 109 bits (120), Expect = 5e-19 Identities = 169/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 |||| | |||||||||| | || || |||| || | ||| || || || || | || Sbjct 1127632 TTTTTCGCTCCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTG 1127691 Query 94832 TAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 ||||| | | ||| ||| | ||| || ||||| || || | ||||| | | ||| | Sbjct 1127692 TAATC-CGC-TAGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTT 1127749 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 ||||||| || || || |||||||| | ||||| |||||||| | ||| || || | Sbjct 1127750 GATCTGGTGGTATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGG 1127809 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| || ||||| || ||||| || ||||| || ||||||||||| Sbjct 1127810 AGCTCTCGACCTCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCAT 1127867 >seq2419 Length=5026 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||||||| | || | ||| | || || |||||||| | ||| |||||| | Sbjct 4998 CCTCCCCTCAATCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCC 4939 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| ||||| ||||| ||||||| || | ||||| || || || Sbjct 4938 AATGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGGGGG 4879 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||| || | | | ||||| | | || || Sbjct 4878 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCCGAGCTCTCAACC 4819 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || ||||| || || |||||||||||||| Sbjct 4818 TCAAGAGTAATAGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 4772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259001484560