Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1750 131 3e-26 seq1954 127 3e-25 seq461 127 3e-25 seq2301 122 1e-23 seq5085 116 6e-22 >seq1750 Length=7204098 Score = 131 bits (144), Expect = 3e-26 Identities = 175/242 (72%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||| || || ||||||||||| || || |||||| ||||||| | || Sbjct 4452595 CTTCGCGATAACATTCAGGGGATCACCAAGCCTGCAATTCGTCGTTTGGCTCGAAGGGGA 4452654 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || ||| | | |||||||| | | | ||| | ||||| ||| Sbjct 4452655 GGAGTGAAGCGTATCAGTGGTCTTATTTATGAAGAAACCAGAGGCGTTCTTAAGATTTTC 4452714 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGT---AAGACT 16630 || | | |||||| |||||| | ||| || ||||| || |||| |||||| Sbjct 4452715 CTTGAAAATGTTATCAGGGATGCTGTTACCTACACTGAGCATGC---ACGTAGGAAGACT 4452771 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 || ||| |||||||| | |||||||| | || || |||||||| | | ||||| ||| Sbjct 4452772 GTGACCGCCATGGATGTGGTCTATGCCCTAAAGCGCCAAGGCCGCACCCTCTATGGCTTT 4452831 Query 16691 GG 16692 || Sbjct 4452832 GG 4452833 Score = 127 bits (140), Expect = 3e-25 Identities = 175/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||| || |||||||| ||||| || || || || ||||||| | || Sbjct 4476643 CTTCGCGATAACATTCAGGGAATCACTAAGCCTGCAATTCGCCGCTTGGCTCGAAGGGGA 4476584 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || ||| | |||||||||| | | | ||| | ||||||||| Sbjct 4476583 GGAGTGAAGCGTATCAGTGGTCTCATCTATGAAGAAACCAGAGGCGTTCTCAAGATCTTC 4476524 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||||||| ||||| | ||| || ||||| ||| | |||||||| Sbjct 4476523 CTTGAAAACGTTATCAGAGATGCCGTTACCTACACTGAGCATGCTCGCAGGAAGACTGTG 4476464 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | |||||||| | || || || ||||| | | ||||| ||||| Sbjct 4476463 ACTGCCATGGATGTGGTCTATGCCCTAAAGCGCCAGGGCCGCACTCTCTATGGCTTTGGC 4476404 Query 16694 AGTTA 16698 |||| Sbjct 4476403 GGTTA 4476399 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||| ||||| || |||||||| || || || ||| ||||||| | || Sbjct 4518074 CTTCGTGATAACATTCAAGGGATTACCAAGCCTGCAATTCGCCGTTTGGCTCGAAGGGGA 4518015 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || ||| | | |||||||| | | | ||| | ||||||||| Sbjct 4518014 GGGGTGAAGCGTATCAGTGGTCTCATTTATGAAGAAACCAGAGGTGTCCTCAAGATCTTC 4517955 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | || ||| |||||| | ||| || ||||| ||| | |||||||| Sbjct 4517954 CTTGAAAATGTAATCAGAGATGCTGTTACCTACACTGAGCATGCTCGCAGGAAGACTGTG 4517895 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | |||||||| |||| ||||| ||||| | | ||||| || || Sbjct 4517894 ACCGCCATGGATGTGGTCTATGCCCTGAAGCGTCAGGGCCGAACCCTCTATGGCTTCGG 4517836 >seq1954 Length=9499498 Score = 127 bits (140), Expect = 3e-25 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| | | | ||| || |||||||| || || ||||| || || || || Sbjct 3211109 GCTAAGCGTCACAGGAAAGTTCTACGTGATAACATTCAGGGGATCACAAAACCGGCCATT 3211050 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||| | ||||| | | |||||||| |||||| || || || | |||||||| | Sbjct 3211049 CGTAGGTTGGCTAGAAGGGGTGGAGTGAAGCGTATCAGCGGTCTGATATATGAAGAAACC 3210990 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||||| || || | | ||||||| |||||| | ||| || ||| Sbjct 3210989 CGTGGGGTTCTGAAGATTTTTCTGGAAAACGTTATCAGGGATGCTGTGACCTACACTGAG 3210930 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 || || | ||||||||||| ||| |||||||| | || ||||| |||| Sbjct 3210929 CATGCCAGGCGTAAGACTGTGACCGCCATGGATGTGGTGTATGCTCTGAA 3210880 >seq461 Length=5900637 Score = 127 bits (140), Expect = 3e-25 Identities = 178/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||| || || || ||||| ||||| || || || || ||||||| | ||||||| Sbjct 874767 GAGATAATATTCAGGGGATCACGAAGCCTGCAATTCGGCGCTTGGCTCGAAGGGGTGGAG 874708 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || ||| |||||||||| | | | || |||||||||||||| Sbjct 874707 TGAAGAGGATCAGCGGTTTGATCTATGAAGAAACCAGAGGGGTCTTGAAGATCTTCCTTG 874648 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||||| | ||||||| | ||| || ||||| || | || |||||||| || Sbjct 874647 AAAATGTTATTCGTGATGCTGTAACCTACACGGAGCATGCCAGGCGGAAGACTGTGACTG 874588 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | |||||||| | || | || || | | | ||||||||||| ||| Sbjct 874587 CCATGGATGTGGTCTATGCTCTCAAGAGGCAGGGTAGGACCCTCTATGGTTTTGGGGGTT 874528 Query 16698 AATCTTCTAA 16707 || |||||| Sbjct 874527 AAGATTCTAA 874518 >seq2301 Length=11085951 Score = 122 bits (134), Expect = 1e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || |||||||| ||||| || || ||||| ||||||| | || |||| Sbjct 3717647 GAGATAACATTCAGGGAATCACTAAGCCTGCGATTCGTCGGTTGGCTCGCAGGGGCGGAG 3717706 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || ||| ||| ||||||| || | | | || |||||||| |||||| Sbjct 3717707 TGAAGAGGATCAGTGGTTTGATCTATGAGGAAACAAGGGGAGTCTTGAAGATATTCCTCG 3717766 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| |||||| | || || ||||| || | | |||||||| ||| Sbjct 3717767 AGAATGTAATCAGAGATGCTGTGACTTACACAGAGCATGCGAGGAGGAAGACTGTGACCG 3717826 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | |||||||| | || | || || | | | |||||||||||| ||| Sbjct 3717827 CCATGGATGTGGTCTATGCTCTCAAGAGGCAGGGGAGGACCCTCTATGGTTTTGGAGGTT 3717886 Score = 82.4 bits (90), Expect = 1e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 |||||||||||||| || || ||||| |||||||| || | ||| | || | | || Sbjct 7052570 CTTCGAGATAACATTCAGGGGATCACAAAGCCAGCCATTAGGCGTTTAGCGAGAAGGGGA 7052629 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || | ||||||| |||| | | |||| |||| || ||| Sbjct 7052630 GGGGTTAAGCGTATCAGCGGCCTCATCTATGAGGAGACGAGGGGTGTTCTGAAAATTTTC 7052689 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || ||| || ||| | || || |||||||| | | |||||||| Sbjct 7052690 TTGGAGAATGTCATCAGAGACGCTGTGACATACACTGAGCACGCCAGGAGGAAGACTGTG 7052749 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || |||||||| | || ||||| Sbjct 7052750 ACAGCCATGGATGTGGTTTATGC 7052772 >seq5085 Length=15980527 Score = 116 bits (128), Expect = 6e-22 Identities = 175/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || ||||| ||||| || || ||||| ||||||| | ||||||| Sbjct 10868505 GAGACAACATTCAGGGCATCACTAAGCCTGCAATTCGTCGCTTGGCTCGAAGGGGTGGAG 10868564 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || ||| ||| | ||||| || | | | || |||||||||||||| Sbjct 10868565 TTAAGAGGATCAGTGGCTTGATTTATGAGGAAACCAGAGGAGTCTTGAAGATCTTCCTTG 10868624 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || ||| ||||| || || || |||||||| | | |||||||| ||| Sbjct 10868625 AAAATGTCATCAGAGATGCCGTCACTTACACAGAGCACGCAAGGAGGAAGACTGTGACCG 10868684 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | |||||||| | || | || || | | | ||||||||||| ||| Sbjct 10868685 CCATGGATGTGGTCTATGCTCTCAAGAGGCAGGGGAGAACCCTCTATGGTTTTGGCGGTT 10868744 Query 16698 AATCTTCTA 16706 ||| |||| Sbjct 10868745 AATACTCTA 10868753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069946391978