Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq922 113 5e-20 seq557 84.2 2e-11 >seq922 Length=8123900 Score = 113 bits (124), Expect = 5e-20 Identities = 114/146 (78%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||||||||| || ||||||||||| || || | ||||||||| || |||||| Sbjct 2994039 CAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAA 2993980 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAA 21594 || |||||||| || || ||||||| ||||||||| || |||| || || |||||||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGA-ACAAAAACTACCAGAAAAGAA 2993921 Query 21595 AATGCCCTCAACGGCAGCAAATGCAA 21620 || || ||||| ||||| |||| Sbjct 2993920 GATACCTTCAACACAGGCAAAAGCAA 2993895 >seq557 Length=6368207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 21465 TAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAG 21524 || ||| |||||| |||||||||||||| | ||| ||||| || || | |||||| | Sbjct 1405737 TATACAACAAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCG 1405796 Query 21525 AAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATAT 21570 | || ||||| || ||||| || |||| |||||| | |||||| || Sbjct 1405797 AGAAGGTTAATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAAT 1405842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531862596225040