Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq922 210 3e-49 seq557 82.4 1e-10 >seq922 Length=8123900 Score = 210 bits (232), Expect = 3e-49 Identities = 590/903 (65%), Gaps = 2/903 (0%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 ||||||||||| || || | || || || |||||||| || || | || ||| || | Sbjct 2994330 TTTTGGTATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAGTGAAATGAGT 2994271 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||| || || ||| ||| ||||| | | | ||||| || | | Sbjct 2994270 TCCATCCAATCAAATGGGTTTTGAACCCCATAGATTTTATCACACCCCAAAGCATTCAAC 2994211 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 | ||||| || || ||||| || || |||||| | | |||||||| | || Sbjct 2994210 AGCCTATCAGCCACAAATTCGATGTACTGGCTCATCAGATTGCCGTTCATTCCCACTAGA 2994151 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || | || || || ||||||| || || ||| | || ||| ||| Sbjct 2994150 GCACAGGGCAAGGCATCACAAACAAATTCTCTCTCTATCTCTACAGATTCCCTTACTATA 2994091 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312 | |||| ||| || | | || || | | | | | | | || || ||| Sbjct 2994090 TTTTGAACGCTTTGTTGAGGGAGCTTGTGGTTTAGAAGATCATAGAGAAGGCAAGCAAAA 2994031 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || ||||| | ||| || ||||| ||| ||||| || || || || | || |||||| Sbjct 2994030 TCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAACCAGGCATT 2993971 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 | || | ||||| ||||||||||||||| || |||||||||||||| ||||| Sbjct 2993970 AAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAGATACCTTCA 2993911 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGA 33492 || ||||| ||||| | |||||| || || | | || ||||| ||| | Sbjct 2993910 ACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATTGATCCATTTTAGC 2993851 Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG-tt 33551 ||||| || || || || ||||| || | |||||| | || | || | || | | Sbjct 2993850 GCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAACA-ATCGACT 2993792 Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611 || ||| | ||| || | |||| || | ||| || || ||||| || || || || Sbjct 2993791 CTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATCTCAGAGTGGAT 2993732 Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671 |||||||||||| ||||| || || |||||| |||||||| | || || || || | Sbjct 2993731 GTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACTTGAACCTCCTT 2993672 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 ||||| |||| | |||||| ||||| || ||| |||||||| || || | Sbjct 2993671 CATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCAAAGAAAGCAAG 2993612 Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791 ||||| |||| || | |||||| | | || || || ||| | | | |||| Sbjct 2993611 GACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTGCTGAAGGTCTTG 2993552 Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 ||| | ||| || ||||| | ||||| || || |||||||| || |||||||| | ||| Sbjct 2993551 AGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTTATACATCTCCCA 2993492 Query 33852 GATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATGGG 33911 || | ||||| || || || || ||||| || || || | ||||| | ||| Sbjct 2993491 AATTTGGGGATATTTTATGGGAAACATGCAAAATCGATCAGGGTTCGAAGCAAGAAGGGG 2993432 Query 33912 TTC 33914 ||| Sbjct 2993431 TTC 2993429 >seq557 Length=6368207 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 || ||| |||||| || ||||| || || |||||||| ||||| || ||||| || | Sbjct 1405737 TATACAACAAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCG 1405796 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33400 | || || | ||| ||||| | || ||||||||||||||||| |||| Sbjct 1405797 AGAAGGTTAATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAATGG 1405844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622902456817360