Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1199 105 6e-18 seq461 86.0 6e-12 >seq1199 Length=7341449 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || |||||||| ||||||| || | || || | || | || Sbjct 1127870 AAGATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGC 1127811 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||| || ||||| | ||||| || || |||||||| || ||||| || ||| Sbjct 1127810 TCCGATACGATCGACAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGAT 1127751 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG-ACTA 26944 |||||| | ||||| | || || || || |||||||||| ||| | | |||| | || Sbjct 1127750 CAACAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCT-AGCGGATTA 1127692 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || || || ||||| || ||| | |||||||| |||||||||||||||||| Sbjct 1127691 CAATATCCAGAAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGAGGAGGA 1127640 >seq461 Length=5900637 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | |||||||| | || ||| | || | || Sbjct 2469636 ATGCAGATCTTTGTTAAAACCCTGACTGGAAAGACCATTACCCTGGAGGTTGAGAGCTCG 2469695 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | ||||| |||||| ||||| |||||||| |||||||| ||| Sbjct 2469696 GATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAA 2469755 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || || || ||| | || |||| | | | || ||||| ||| Sbjct 2469756 CAGAGGCTCATCTTCGCTGGTAAGCAATTAGAGGATGGTCGTACTCTCGCGGACTACAAC 2469815 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || || || |||| |||| || || ||| | || || Sbjct 2469816 ATTCAAAAGGAGTCCACCCTCCACTTGGTTCTCAGGCTTCGTGGGGG 2469862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478628020073120