Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq922 125 2e-23 >seq922 Length=8123900 Score = 125 bits (138), Expect = 2e-23 Identities = 337/508 (66%), Gaps = 13/508 (3%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAA---CAATGAACGTTCATTCGCGGAACGT 22494 || || ||||| |||||||| |||||||| || | |||| || || || || | Sbjct 2993834 AAAAAAGCAGACTGGGCGCTAAAATGGATCAATTCCTCTGAA---TCTTTTGCAGAGAGG 2993890 Query 22495 CTTATTGCATTTGC-TGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 | ||||| ||||| |||| ||||||| || ||||||||||| |||||| | || || Sbjct 2993891 TTGATTGCTTTTGCCTGTG-TTGAAGGTATCTTCTTTTCTGGTAGTTTTTGTTCCATATT 2993949 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||||||||||| | | | ||||| ||| |||| || || ||||| | ||| | Sbjct 2993950 TTGGCTAAAAAAAAGGGGTTTAATGCCTGGTTTAACCTTCTCTAATGAACTCATTTCAAG 2994009 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAA 22673 |||||| ||| | || |||||||| || | || ||| ||| | | | || || Sbjct 2994010 AGATGAAGGTTTACACTGTGATTTTGCTTGCCTTCTCTAT---GATCTTCTAAACCACAA 2994066 Query 22674 ACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATT 22733 || || | ||| || | |||| | | | | || || | || | ||| Sbjct 2994067 GCTCCCTCAACAAAGCGTTCAAAATATAGTAAGGGAATCTGTAGAGATAGAGAGAGAATT 2994126 Query 22734 TATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATC-AATGAGTACAT 22792 | |||| || || || || ||| | || || || | | |||| ||||| | Sbjct 2994127 TGTTTGTGATGCCTTGCCCTGTGCTCTAGTGGGAATGAACGGC-AATCTGATGAGCCAGT 2994185 Query 22793 ATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACG 22852 | || ||||||| || ||| | || || | | | | || | || || ||| | Sbjct 2994186 ACATCGAATTTGTGGCTGATAGGCTGTTGAATGCTTTGGGGTGTGATAAAATCTATGGGG 2994245 Query 22853 TCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCG 22912 | || |||||||| ||||||||||| |||||||| | || ||||| |||||||| | Sbjct 2994246 TTCAAAACCCATTTGATTGGATGGAACTCATTTCACTGCAGGGGAAGACTAATTTCTTTG 2994305 Query 22913 AAAAAAGAGTTGGTGAATACCAAAAAGC 22940 | || || ||||| ||||||||||| || Sbjct 2994306 AGAAGAGGGTTGGAGAATACCAAAAGGC 2994333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303257646293372