Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq461 89.7 4e-13 >seq461 Length=5900637 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || |||||||| | || || |||| || ||| | Sbjct 2468724 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAGACCATCACTCTCGAGGTAGAGAGCTCT 2468783 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| |||||||| || || || || Sbjct 2468784 GACACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 2468843 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGC-GATTATA 24168 |||||| |||||| | || |||||| | |||||| ||| | || | || ||||||| Sbjct 2468844 CAGAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACACTT--GCTGATTATA 2468901 Query 24169 ACATTCAAAAAGAATCTACA 24188 |||| || || || || ||| Sbjct 2468902 ACATCCAGAAGGAGTCCACA 2468921 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | |||||||| | |||||| | || || ||| | Sbjct 2469636 ATGCAGATCTTTGTTAAAACCCTGACTGGAAAGACCATTACCCTGGAGGTTGAGAGCTCG 2469695 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| |||||| ||||| ||||| || |||||||| ||| Sbjct 2469696 GATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAA 2469755 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || || |||||| | || |||| | | || || || ||| Sbjct 2469756 CAGAGGCTCATCTTCGCTGGTAAGCAATTAGAGGATGGTCGTACTCTCGCGGACTACAAC 2469815 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| || || || Sbjct 2469816 ATTCAAAAGGAGTCCAC 2469832 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || |||| || | || || ||| | Sbjct 2469864 ATGCAAATTTTTGTCAAGACCCTGACTGGTAAGACGATCACATTGGAGGTTGAGAGCTCG 2469923 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||||| ||||| |||||||| ||||| || || Sbjct 2469924 GACACCATCGATAATGTGAAGTCAAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 2469983 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | | |||||||||| | || |||| || | | ||||| || Sbjct 2469984 CAAAGGCTGATCTTTGCCGGCAAGCAATTGGAGGATGGAAGGACTCTGGCTGATTACAAT 2470043 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||||| || | || ||||| || || Sbjct 2470044 ATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCAGGTTGAGGGGTGG 2470090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429905891850630