Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq21 102 7e-17 seq461 89.7 4e-13 >seq21 Length=3941259 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| | || || || ||||||||| | || ||| | Sbjct 1372443 ATGCAAATTTTTGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAGGTTGAGAGCTCG 1372502 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || |||||| ||||| || || |||| ||| ||| Sbjct 1372503 GATACAATTGATAACGTGAAGGCCAAAATTCAAGATAAGGAGGGAATCCCGCCTGACCAG 1372562 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||||| ||| |||||||| | || |||| | ||| | ||||| || || Sbjct 1372563 CAGAGGCTTATTTTTGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCCGACTACAAT 1372622 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || || ||||| || | ||| |||||||||| | || ||||||| Sbjct 1372623 ATCCAGAAGGAGTCCACACTCCATTTGGTGTTGAGGCTCCGTGGAGGAA 1372671 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || |||||||| || ||||| || || |||||||| |||| ||| | Sbjct 1371988 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTCGAGGTCGAGAGCTCT 1372047 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || || || ||| || || || || | || ||| || Sbjct 1372048 GACACTATTG-ACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCA 1372106 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||| |||| ||| || || ||| | || |||| || | ||||| || || Sbjct 1372107 GCAAAGACTAATTTTTGCTGGTAAGCAACTCGAGGATGGTCGGACTCTTGCCGACTACAA 1372166 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||| || |||||||||||| | ||| ||||| Sbjct 1372167 CATCCAGAAAGAGTCTACTCTCCATTTGGTG 1372197 >seq461 Length=5900637 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGA--AACGGAGTCCA 115343 |||||||||||||| || || ||||| || |||||||| || | || |||| || Sbjct 2469408 ATGCAAATTTTTGTGAAGACCCTCACTGGTAAAACCATCACTTTGGAGGTTGAGAGTTCA 2469467 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 |||||| ||| | || || || || || || || || ||||| ||| | Sbjct 2469468 --GACACTATTGATAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACC 2469525 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| | |||| ||| || || ||||| ||||||| | ||| | ||||| |||| Sbjct 2469526 AGCAAAGGTTGATTTTTGCCGGTAAGCAATTGGAAGATGGCCGTACCCTCGCCGACTATA 2469585 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTG 115495 | ||||| || ||||| || | ||| ||||| Sbjct 2469586 ATATTCAGAAGGAGTCCACACTCCATCTGGTG 2469617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425314213425520