Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1199 109 5e-19 seq461 109 5e-19 seq2419 96.9 3e-15 seq21 91.5 1e-13 seq5571 84.2 2e-11 >seq1199 Length=7341449 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGT 131080 ||| || | ||| | |||||||| || || || |||||||| ||| | ||| || | Sbjct 1127655 CAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCT-AGGGTTCGGCCAT 1127713 Query 131081 CCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGT 131140 | || |||||||| |||||| |||| | || || || || || || || || ||||||| Sbjct 1127714 CTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGTATGCCCTCTTTGT 1127773 Query 131141 CGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGG 131200 | |||||| ||||| | || | ||||||| | ||||| || | |||| || Sbjct 1127774 CCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACCTCAAGAGTAATGG 1127833 Query 131201 TTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || || ||||| ||||||||||| |||||||| Sbjct 1127834 TCTTGCCAGTTAGGGTTTTTACGAAGATCTGCAT 1127867 >seq461 Length=5900637 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | ||| |||||||| || || |||||||| Sbjct 2470318 CCACCACGAAGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCA 2470259 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | | || || |||||||| || || |||| | | ||||||||| || ||| Sbjct 2470258 AGGGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 2470199 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||| ||||| | || | ||||||| | ||| | Sbjct 2470198 ATGCCCTCCTTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCACC 2470139 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||| || || || ||||| || || |||||||||||| Sbjct 2470138 TCAAGGGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCATG 2470091 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||| || || | ||| ||||||||||||||||||||||| | ||||| ||| Sbjct 2469391 AGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCAAGAGTGCGACCATCC 2469332 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | |||||| || || |||| | | ||||| || |||||||| ||||| ||||| Sbjct 2469331 TCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGGATCCCTTCCTTGTCC 2469272 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||| | | || | |||||| | | ||||| || | ||| | || Sbjct 2469271 TGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACCTCAAGGGTGATTGTC 2469212 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || ||||| ||||| ||||| || |||||| Sbjct 2469211 TTCCCAGTTAGGGTTTTGACGAAGATTTGCATG 2469179 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | ||| |||||||||||||||||||| || | || || ||| Sbjct 2469847 AGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACCATCC 2469788 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 |||| ||||| || ||| |||| | | ||| ||||| |||||||| ||||| ||||| Sbjct 2469787 TCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCC 2469728 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | || | ||||| | | ||| | || | ||||| ||| Sbjct 2469727 TGGATCTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATGGTC 2469668 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| || || |||||||| Sbjct 2469667 TTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 >seq2419 Length=5026 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | ||| || || || | || | ||||||||||||||| |||||||||||| Sbjct 4999 GCCTCCCCTCAATCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGC 4940 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||||| |||||||| || || |||| || ||||||||||| || || Sbjct 4939 CAATGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGGGG 4880 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || || || ||| || ||| | | || | || || | | ||| | Sbjct 4879 GATTCCCTCCTTATCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCCGAGCTCTCAAC 4820 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || || || || || || |||||||| Sbjct 4819 CTCAAGAGTAATAGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 4772 >seq21 Length=3941259 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| ||||| | ||| |||||||| || || ||||| || || ||| || Sbjct 1372885 CGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCA 1372826 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || || |||| || | |||||| || || || || || || ||| Sbjct 1372825 TCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTG 1372766 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| ||| ||| | | || | ||||| | | || | || | |||| | Sbjct 1372765 TCTTGGATCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATG 1372706 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| || || || || ||||||||||| Sbjct 1372705 GTCTTGCCGGTCAGGGTCTTAACAAAAATCTGCAT 1372671 >seq5571 Length=10537363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | ||| |||||||| || ||||||||||| Sbjct 10537220 CCACCACGGAGACGGAGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCA 10537279 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| ||||| |||| | | |||||||| || ||| Sbjct 10537280 AGGGTACGACCATCCTCGAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCGGGGGGG 10537339 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 10537340 ATGCCTTCCTTGTC 10537353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471978897680640