Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq922 181 1e-40 seq557 82.4 1e-10 >seq922 Length=8123900 Score = 181 bits (200), Expect = 1e-40 Identities = 394/587 (67%), Gaps = 2/587 (0%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || ||||| ||||||| ||| || ||||| ||| | ||| || || || || | Sbjct 2994039 CAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAA 2993980 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||||| || | ||||| |||||||||||||| ||| ||||||||||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAG 2993920 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 32840 || ||||| || ||||| ||||| | |||||| || || | | || ||| Sbjct 2993919 ATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATTGATC 2993860 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 32900 || ||| | ||||| || || || || ||||| || | || || | ||| | || Sbjct 2993859 CATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAAC 2993800 Query 32901 AGATAG-tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 | || | | || ||| | ||| || | || | |||| ||| || || ||||| || Sbjct 2993799 A-ATCGACTCTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATCTC 2993741 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTG 33019 || || |||||||||||||| || || || || ||||| |||||||| | || || Sbjct 2993740 AGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACTTG 2993681 Query 33020 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33079 || || | ||||| | || | |||||| ||||| || ||| |||||||| Sbjct 2993680 AACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCAAA 2993621 Query 33080 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 33139 || || | ||||| |||| || | |||||| | | || || || ||| | | Sbjct 2993620 GAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTGCTG 2993561 Query 33140 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33199 | |||| ||| | ||| || ||||| | ||||| || || |||||||| || ||||| Sbjct 2993560 AAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTTATA 2993501 Query 33200 CATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 33246 ||| | ||| || | |||||| || ||||| || ||||| || Sbjct 2993500 CATCTCCCAAATTTGGGGATATTTTATGGGAAACATGCAAAATCGAT 2993454 >seq557 Length=6368207 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 32650 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709 || ||| |||||| || ||||| || ||||||||||| ||||| || | ||| || | Sbjct 1405737 TATACAACAAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCG 1405796 Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 32757 | || || | ||| ||||| | || ||||||||||||||||| |||| Sbjct 1405797 AGAAGGTTAATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAATGG 1405844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633586489381600