Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq461 134 1e-26 seq21 113 4e-20 seq3001 89.7 4e-13 seq1199 89.7 4e-13 seq3426 86.0 5e-12 >seq461 Length=5900637 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| ||||| | |||||| | || || ||| || Sbjct 2469864 ATGCAAATTTTTGTCAAGACCCTGACTGGTAAGACGATCACATTGGAGGTTGAGAGCTCG 2469923 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| |||| | ||| ||||| ||||| || || |||||||| Sbjct 2469924 GACACCATCGATAATGTGAAGTCAAAGATTCAG-GACAAGGAAGGCATCCCTCCTGACCA 2469982 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||||||||| ||||| || |||| | ||| ||| |||||||| Sbjct 2469983 GCAAAGGCTGATCTTTGCCGGCAAGCAATTGGAGGATGGAAGGACTCTGGCTGATTACAA 2470042 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || ||||| || ||||| || || ||| | || || || Sbjct 2470043 TATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCAGGTTGAGGGGTGG 2470090 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || |||||| ||||||| | || || ||| || Sbjct 2469408 ATGCAAATTTTTGTGAAGACCCTCACTGGTAAAACCATCACTTTGGAGGTTGAGAGTTCA 2469467 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| ||||| || || || || |||||||| Sbjct 2469468 GACACTATTGATAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 2469527 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||||||||| || ||||| ||||||| || || | | ||| || ||| Sbjct 2469528 CAAAGGTTGATTTTTGCCGGTAAGCAATTGGAAGATGGCCGTACCCTCGCCGACTATAAT 2469587 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| || || ||||| || ||| | ||||| ||||| Sbjct 2469588 ATTCAGAAGGAGTCCACACTCCATCTGGTGCTTAGGCT 2469625 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || |||| || | || |||||| || Sbjct 2470092 ATGCAGATTTTTGTTAAGACTCTTACTGGAAAGACCATTACCCTTGAGGTGGAGAGCTCC 2470151 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || |||| ||| ||||| || || || ||||| ||| Sbjct 2470152 GATACCATTGA--CAATGTCAAGGCGAAAATTCAG-GACAAGGAGGGCATCCCACCAGAC 2470208 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || || | ||||||| | || | | |||||| Sbjct 2470209 CAGCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAAGATGGGAGGACCCTTGCTGATTAC 2470268 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || ||||| || ||| | || || Sbjct 2470269 AATATCCAGAAGGAGTCCACCCTTCATCTCGTCCT 2470303 >seq21 Length=3941259 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || |||| || ||| ||| Sbjct 1371988 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTCGAGGTCGAGAGCTCT 1372047 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || |||| || || | ||| ||||| || || ||||| |||||||| Sbjct 1372048 GACACTATTGACAACGTGAAGGCCAAGATTCA-AGACAAGGAGGGTATTCCTCCTGACCA 1372106 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | |||||||| || || ||| | || |||| ||| ||| | | ||| ||||| Sbjct 1372107 GCAAAGACTAATTTTTGCTGGTAAGCAACTCGAGGATGGTCGGACTCTTGCCGACTACAA 1372166 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || ||||| || || || ||||| ||||| ||||| Sbjct 1372167 CATCCAGAAAGAGTCTACTCTCCATTTGGTGCTCAGGCT 1372205 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||||| || |||| || | |||||||| || Sbjct 1372670 AATGCAGATTTTTGTTAAGACCCTGACCGGCAAGACCATTACTCTTGAAGTGGAAAGCTC 1372729 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| || ||| ||||| || |||||||||||||| || Sbjct 1372730 GGATACCATTGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGGATTCCACCTGATCA 1372789 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || | || |||| ||| || ||| || ||||| Sbjct 1372790 GCAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCCTGGCGGACTACAA 1372849 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || ||||| || ||||| ||||| Sbjct 1372850 TATCCAGAAGGAGTCCACCCTCCATTTGGTGCT 1372882 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || | || || ||| || Sbjct 1371760 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTTGAGGTCGAGAGCTCG 1371819 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| |||| || || | ||| || || || || || || ||||| || Sbjct 1371820 GACACTATCGATAATGTGAAGGCCAAGATTCA-GGATAAGGAGGGAATCCCCCCTGATCA 1371878 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || ||| | || |||| | ||| | | |||||||| Sbjct 1371879 GCAGAGGCTCATCTTTGCTGGTAAGCAACTTGAGGATGGCAGAACTCTTGCTGATTACAA 1371938 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 1371939 TATCCAAAAGGAGTCCACACTACACTTGGTGCTCAGGCT 1371977 >seq3001 Length=2574463 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 25096 AAGAAGGGA-TTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGAT 25154 ||| ||||| |||| ||||||||||| | | || ||||| ||||| ||| |||| ||| Sbjct 511638 AAGGAGGGAATTCCTCCTGACCAACAAAGACTGATATTTGCTGGCAAGCAACTAGATGAT 511697 Query 25155 GATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGG 25214 | || ||| | | ||||||||||| || || |||||||| || ||| | ||| | ||| Sbjct 511698 GGGCGAACTCTTGCTGATTACAATATACAGAAGGAATCCACCCTTCATCTTGTGATGAGG 511757 Query 25215 CTAAGAGGAGG 25225 | ||||| || Sbjct 511758 TTGAGAGGTGG 511768 >seq1199 Length=7341449 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||| || | || || || |||| || | || || ||| || Sbjct 1127867 ATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGCTCC 1127808 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| || || ||| |||||| |||||||| || || ||||| || | Sbjct 1127807 GATACGATCGA--CAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGATC 1127750 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || || || | ||||||| || || | | ||||||| Sbjct 1127749 AACAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGATTACA 1127690 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||| || ||||| || || || ||| | || || || || ||||||||| Sbjct 1127689 ATATCCAGAAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGAGGAGGA 1127640 >seq3426 Length=3004207 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || | || ||||| |||| || | || || ||| || Sbjct 2138993 AATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTTGAGGTCGAGAGCTC 2139052 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| || | || || || ||| || ||| |||||||| || || ||||| || Sbjct 2139053 TGATACAGTTGA--CAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGAT 2139110 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || || || |||||||| | ||||||| || || | | |||||| Sbjct 2139111 CAGCAACGCCTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGAACACTAGCTGATTAC 2139170 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || ||||| || || ||| | || || || || |||||||| Sbjct 2139171 AATATCCAGAAGGAATCTACTCTTCATCTGGTTCTGAGACTCAGAGGAGG 2139220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433297654310990