Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq922 210 2e-49 seq2236 87.8 2e-12 seq503 87.8 2e-12 seq534 86.0 7e-12 seq461 86.0 7e-12 seq438 86.0 7e-12 >seq922 Length=8123900 Score = 210 bits (232), Expect = 2e-49 Identities = 411/602 (68%), Gaps = 13/602 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||| || ||||||||||| |||| ||| || | ||||| ||| ||||| Sbjct 2994040 GCAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAA 2993981 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | | || | ||| || ||||||||||| ||| ||||||||||||||| || Sbjct 2993980 ACCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAA 2993921 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC---GGAATTACT 93267 |||||||| || ||||| || | | | || |||||| | | |||||| Sbjct 2993920 GATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATT--- 2993864 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||||||||||| ||||| || |||||||| || ||| || | ||||| | ||| Sbjct 2993863 ---GATCCATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGC 2993807 Query 93328 GTTAAATAGGTAATCTCG-CTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 | || | | ||| ||| ||||| ||||| | || | || || | Sbjct 2993806 CCTGAACAATCGA-CTCTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGT 2993748 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 |||| ||||| |||| || || || || || ||||| || |||||| ||||| || | Sbjct 2993747 ACATCTCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTG 2993688 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 | || || || | |||| | | || |||||| |||||||||||| || | Sbjct 2993687 CAACTTGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAG 2993628 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 ||||||| ||||| | | ||| |||| || ||||| || || | || ||||| Sbjct 2993627 CTGCAAAGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCC 2993568 Query 93567 AAT-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 | | | || || |||| || |||||||| ||||| ||||||| || || || |||||| Sbjct 2993567 AGTGCTGA-AGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCT 2993509 Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 || || ||||| ||||| || | |||||| || ||||| ||| ||| |||| |||| Sbjct 2993508 TTCTTATACATCTCCCAAATTTGGGGATATTTTATGGGAAACATGCAAAATCGATCAGGG 2993449 Query 93686 TT 93687 || Sbjct 2993448 TT 2993447 >seq2236 Length=3568992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA- 126320 || ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 2829086 TAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAG 2829143 Query 126321 ---GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 2829144 AGGGCGTGGGTTCAAATCCCACTTCTGACA 2829173 >seq503 Length=6860876 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 1773657 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 1773600 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 1773599 GCGTGGGTTCAAATCCCACTTCTGACAA 1773572 >seq534 Length=5311347 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | | ||||||| Sbjct 1408294 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGTGGG 1408237 Query 126328 TTCGAACCCCACACCTGACAA 126348 ||| || |||||| ||| ||| Sbjct 1408236 TTCAAATCCCACAGCTGTCAA 1408216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 351207 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 351150 Query 126325 GGGTTCGAACCCCACACCTGACAAATTA 126352 |||||| || |||||| ||| || |||| Sbjct 351149 GGGTTCAAATCCCACAGCTGTCATATTA 351122 >seq461 Length=5900637 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 1426400 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 1426343 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||| || ||||| |||||||| Sbjct 1426342 GCGTGGGTTCAAATCCCACTTCTGACAAA 1426314 >seq438 Length=5379737 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 3749083 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 3749140 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 3749141 GCGTGGGTTCAAATCCCACTTCTGACA 3749167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556820803473040