Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq21 129 5e-25 seq461 123 2e-23 seq1199 122 7e-23 seq2419 107 2e-18 seq922 84.2 2e-11 >seq21 Length=3941259 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| || | ||||| || || | |||||||||||||||| | | Sbjct 1372671 ATGCAGATTTTTGTTAAGACCCTGACCGGCAAGACCATTACTCTTGAAGTGGAAAGCTCG 1372730 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || || |||||||||||||| |||||||| ||||| Sbjct 1372731 GATACCATTGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGGATTCCACCTGATCAG 1372790 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||| | |||||| || ||| | | || ||||| Sbjct 1372791 CAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCCTGGCGGACTACAAT 1372850 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || |||||| | ||||| || Sbjct 1372851 ATCCAGAAGGAGTCCACCCTCCATTTGGT 1372879 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || || || || | || | || || || | | | Sbjct 1372443 ATGCAAATTTTTGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAGGTTGAGAGCTCG 1372502 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || ||||||||||| |||||||| || || || || || Sbjct 1372503 GATACAATTGATAACGTGAAGGCCAAAATTCAAGATAAGGAGGGAATCCCGCCTGACCAG 1372562 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| ||||||||| | |||||| ||| ||| | |||| ||||| Sbjct 1372563 CAGAGGCTTATTTTTGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCCGACTACAAT 1372622 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | ||||| || ||| | | || ||||| Sbjct 1372623 ATCCAGAAGGAGTCCACACTCCATTTGGTGTTGAGGCTCCGTGGAGG 1372669 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || || || | || || || || |||| | | Sbjct 1372216 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAGACCATTACCCTGGAGGTTGAAAGCTCA 1372275 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | || |||||||||||||||||||||||||| || || || Sbjct 1372276 GATACAATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 1372335 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || |||||| | |||||| | ||| | | || || || Sbjct 1372336 CAAAGGCTAATTTTTGCTGGTAAACAGCTTGAGGATGGAAGGACCCTTGCTGACTATAAT 1372395 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| || || Sbjct 1372396 ATCCAGAAAGAGTCTAC 1372412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || | ||||| || || || | | | Sbjct 1371987 GATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTCGAGGTCGAGAGCTC 1372046 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | ||| | | || || ||||||||||||||||||||||| || || || Sbjct 1372047 TGACACTATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCA 1372106 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| || || || | |||||| || || | |||| ||||| Sbjct 1372107 GCAAAGACTAATTTTTGCTGGTAAGCAACTCGAGGATGGTCGGACTCTTGCCGACTACAA 1372166 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGT 22427 ||| || ||||| || || | ||||| || Sbjct 1372167 CATCCAGAAAGAGTCTACTCTCCATTTGGT 1372196 >seq461 Length=5900637 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| ||| | || || || || | || ||||| ||||| | | || Sbjct 2470092 ATGCAGATTTTTGTTAAGACTCTTACTGGAAAGACCATTACCCTTGAGGTGGAGAGCTCC 2470151 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| |||||||| ||||||||||| || ||||| || || Sbjct 2470152 GATACCATTGACAATGTCAAGGCGAAAATTCAGGACAAGGAGGGCATCCCACCAGACCAG 2470211 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || ||| | || ||| | ||| | | |||||||| Sbjct 2470212 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAAGATGGGAGGACCCTTGCTGATTACAAT 2470271 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | ||| | || ||||| | || || ||| Sbjct 2470272 ATCCAGAAGGAGTCCACCCTTCATCTCGTCCTGCGACTTCGTGGTGGT 2470319 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| |||| || || || |||| ||||| || || | | | Sbjct 2469180 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACAATCACCCTTGAGGTCGAGAGCTCA 2469239 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || || || |||||||| || || || |||||||| Sbjct 2469240 GATACTATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGATCAG 2469299 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || || ||||| |||||| ||||| | | ||||||||| Sbjct 2469300 CAAAGGCTCATCTTTGCTGGGAAGCAGTTGGAGGATGGTCGCACTCTTGCAGATTACAAC 2469359 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| || || ||| | || || || Sbjct 2469360 ATTCAAAAGGAGTCTACCCTTCACTTGGT 2469388 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||||||||| | || || || || | || || || || || | | | Sbjct 2469636 ATGCAGATCTTTGTTAAAACCCTGACTGGAAAGACCATTACCCTGGAGGTTGAGAGCTCG 2469695 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| ||| || || |||||||| || || || ||||| ||| Sbjct 2469696 GATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAA 2469755 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || || ||||||||| || || || | || |||||| Sbjct 2469756 CAGAGGCTCATCTTCGCTGGTAAGCAATTAGAGGATGGTCGTACTCTCGCGGACTACAAC 2469815 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||||| || |||||| | || || ||| Sbjct 2469816 ATTCAAAAGGAGTCCACCCTCCACTTGGTT 2469845 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | || ||||| ||| |||| | || || || | | | Sbjct 2469864 ATGCAAATTTTTGTCAAGACCCTGACTGGTAAGACGATCACATTGGAGGTTGAGAGCTCG 2469923 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| ||||| |||||||| || || || || || || Sbjct 2469924 GACACCATCGATAATGTGAAGTCAAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 2469983 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||||||||| || || |||||| | || | | |||||||| Sbjct 2469984 CAAAGGCTGATCTTTGCCGGCAAGCAATTGGAGGATGGAAGGACTCTGGCTGATTACAAT 2470043 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || |||||| | ||||| || Sbjct 2470044 ATCCAGAAGGAGTCCACCCTCCATTTGGT 2470072 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||||||||| |||| || ||||| |||| || || || || | | | Sbjct 2468952 ATGCAGATCTTTGTTAAAACCCTAACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCT 2469011 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || ||| || || |||||||| || ||||| || || || Sbjct 2469012 GACACCATAGACAATGTAAAGGCAAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAG 2469071 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || || || |||||| ||| || | | || || ||| Sbjct 2469072 CAGAGATTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTGCTGACTATAAC 2469131 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || ||||| Sbjct 2469132 ATCCAAAAGGAGTCCAC 2469148 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | || |||||||| ||||| | || || || | | Sbjct 2469408 ATGCAAATTTTTGTGAAGACCCTCACTGGTAAAACCATCACTTTGGAGGTTGAGAGTTCA 2469467 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || || ||||||||||| || || || || || Sbjct 2469468 GACACTATTGATAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 2469527 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || |||||||| || || || || ||| ||| ||| || |||| || || Sbjct 2469528 CAAAGGTTGATTTTTGCCGGTAAGCAATTGGAAGATGGCCGTACCCTCGCCGACTATAAT 2469587 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || ||||| Sbjct 2469588 ATTCAGAAGGAGTCCAC 2469604 >seq1199 Length=7341449 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| |||| || || || | |||||||| || || | | Sbjct 1127870 AAGATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGC 1127811 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | ||| || |||| ||||| || ||||| ||||| || ||||| ||| Sbjct 1127810 TCCGATACGATCGACAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGAT 1127751 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||||| || || || || || || ||| | || ||| ||| ||| | | |||||| Sbjct 1127750 CAACAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGATTAC 1127691 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| || || | ||| | ||| || || | | ||||| Sbjct 1127690 AATATCCAGAAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGAGGAGG 1127641 >seq2419 Length=5026 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || |||||||| || | || || || || | |||||||| || || | | Sbjct 4770 AGATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACTATTACTCTTGAGGTTGAGAGCT 4829 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| || | || || || ||||| |||||||| || || || || | Sbjct 4830 CGGACACCATTGACAATGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCCCCTGACC 4889 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || || | || ||||| || || ||| | |||||| ||| || | ||||||||| Sbjct 4890 AGCAGCGCTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACATTGGCCGATTACA 4949 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| ||||| || || ||| | || | || | |||||| | ||||| Sbjct 4950 ACATCCAAAAGGAGTCGACCCTTCACCTTGTCCTCCGATTGAGGGGAGG 4998 >seq922 Length=8123900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 117064 TGATCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTT 117123 |||| ||||| ||| ||| ||||| || |||||||| || |||||| | ||||||||| Sbjct 2993892 TGATTGCTTTTGCCTGTGTTGAAGGTATCTTCTTTTCTGGTAGTTTTTGTTCCATATTTT 2993951 Query 117124 TTATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTG 117183 | || | | ||| ||||||| ||| |||| || || ||| | || || | | Sbjct 2993952 GGCTAAAAAAAAGGGGTTTAATGCCTGGTTTAACCTTCTCTAATGAACTCATTTCAAGAG 2994011 Query 117184 ACGAAGGTTTACACACCGATTTTGCGTGC 117212 | |||||||||||| |||||||| ||| Sbjct 2994012 ATGAAGGTTTACACTGTGATTTTGCTTGC 2994040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698606710490