Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2748 91.5 3e-13 seq557 89.7 1e-12 seq1809 86.0 1e-11 seq18 84.2 4e-11 >seq2748 Length=2541361 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 |||| | ||||| || |||||||| || || |||| |||||| |||||||| |||| Sbjct 1244326 AGGTTGTACAGTTCTCCGGTTATGTCTCAGAGCACTCTGCCTACCACCACGGTGAACAGA 1244267 Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776 ||||| | | ||||||| || ||||||||||| | ||| |||| ||||| || || Sbjct 1244266 GTCTGGCCGCTACCATTGTTGGAATGGCACAGGATTTTGTTGGCACCAACAATATAAATC 1244207 Query 218777 TGCTGCTCCCCAACGGTCAGTTTGG 218801 | ||| || |||||| ||||| Sbjct 1244206 TCTTGCAACCACTCGGTCAATTTGG 1244182 >seq557 Length=6368207 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 5917716 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 5917657 Query 142562 GCCCCAC 142568 ||||||| Sbjct 5917656 GCCCCAC 5917650 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5925424 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5925365 Query 142563 CCCCAC 142568 |||||| Sbjct 5925364 CCCCAC 5925359 >seq1809 Length=9585472 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 6751015 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6750956 Query 142564 CCCAC 142568 ||||| Sbjct 6750955 CCCAC 6750951 >seq18 Length=4329289 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 804286 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 804345 Query 142563 CCCCAC 142568 |||||| Sbjct 804346 CCCCAC 804351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027761130012386