Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3426 95.1 9e-15 seq3001 93.3 3e-14 seq461 84.2 2e-11 seq21 84.2 2e-11 >seq3426 Length=3004207 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| || || | ||||| ||||||| || ||||||||| | || || | Sbjct 2138991 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTTGAGGTCGAGAGC 2139050 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || || | | || | ||| || || || |||||||| | || | | Sbjct 2139051 TCTGATACAGTTGACAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGAT 2139110 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || | || ||||| || |||||||| || |||||| ||| | || |||||| Sbjct 2139111 CAGCAACGCCTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGAACACTAGCTGATTAC 2139170 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||| ||||||||||||||||||||| |||| Sbjct 2139171 AATATCCAGAAGGAATCTACTCTTCATCTGGT 2139202 >seq3001 Length=2574463 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| ||||| | ||| ||||||| ||||| || ||||||||||| |||||||| Sbjct 511635 GATAAGGAGGGAATTCCTCCTGACCAACAAAGACTGATATTTGCTGGCAAGCAACTAGAT 511694 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||| |||| | || ||||||||||| ||||||||||| || |||||| Sbjct 511695 GATGGGCGAACTCTTGCTGATTACAATATACAGAAGGAATCCACCCTTCAT 511745 >seq461 Length=5900637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || | || || || ||||||||| | || ||| | | Sbjct 2470092 ATGCAGATTTTTGTTAAGACTCTTACTGGAAAGACCATTACCCTTGAGGTGGAGAGCTCC 2470151 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| || || ||||| | || | |||| Sbjct 2470152 GATACCATTGACAATGTCAAGGCGAAAATTCAGGACAAGGAGGGCATCCCACCAGACCAG 2470211 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| || || || |||||| | || | || ||||||||| Sbjct 2470212 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAAGATGGGAGGACCCTTGCTGATTACAAT 2470271 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 || |||||||| || || |||||| Sbjct 2470272 ATCCAGAAGGAGTCCACCCTTCAT 2470295 >seq21 Length=3941259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || || ||||| ||||||||| |||| ||| | || Sbjct 1372216 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAGACCATTACCCTGGAGGTTGAAAGCTCA 1372275 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| |||||| || || |||||| | || |||| Sbjct 1372276 GATACAATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 1372335 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || || || |||||||| ||||| || || ||| || || | || || || ||| Sbjct 1372336 CAAAGGCTAATTTTTGCTGGTAAACAGCTTGAGGATGGAAGGACCCTTGCTGACTATAAT 1372395 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| || ||||||||||| |||| Sbjct 1372396 ATCCAGAAAGAGTCTACTCTTCACTTGGT 1372424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358099720744084