Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq461 131 1e-25 seq21 82.4 6e-11 >seq461 Length=5900637 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || || | ||| || || | || || || |||||||||||||| || Sbjct 2469865 ATACCCCCACGAAGCCTGAGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCC 2469806 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| ||| || | ||| ||||||||| ||||||| | ||||||||| ||| Sbjct 2469805 GCGAGAGTACGACCATCCTCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGA 2469746 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| |||||| || | | |||| ||| || | | || Sbjct 2469745 GGGATCCCTTCCTTGTCCTGGATCTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCA 2469686 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || ||||| ||||| ||||| |||||||| Sbjct 2469685 ACCTCCAGGGTAATGGTCTTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 ||| |||| ||||| |||| || || | ||| | || || || || || || |||||| Sbjct 2470324 CAATTACCACCACGAAGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAA 2470265 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || | || | ||||||||| || || ||||| ||||||| | ||| ||||| Sbjct 2470264 TCAGCAAGGGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCT 2470205 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 || || ||||| || ||||| ||| || || | | |||| ||| |||| | Sbjct 2470204 GGTGGGATGCCCTCCTTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTC 2470145 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || || | ||| | || || || || ||||| || ||||||||||||||| Sbjct 2470144 TCCACCTCAAGGGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCATG 2470091 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| ||||| || || | |||||| ||| || | ||| || ||| Sbjct 2469148 GTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGGCCATCCTCCAATTGCTTTCCA 2469089 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | | ||| ||||| || ||||||||||| ||||| |||||| ||| Sbjct 2469088 GCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTTGCCTTT 2469029 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | || || |||| ||| | ||||| || || || ||| Sbjct 2469028 ACATTGTCTATGGTGTCAGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTTAGGGTT 2468969 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2468968 TTAACAAAGATCTGCAT 2468952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || || || | || || || | ||||| || ||||||||||||||||| Sbjct 2469409 ATGCCGCCTCGAAGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCT 2469350 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| ||| || | || || ||||| ||||||| | || || || ||| Sbjct 2469349 GCAAGAGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGA 2469290 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| |||| | |||| || || | | ||| Sbjct 2469289 GGGATCCCTTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCG 2469230 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || || || || || ||||| || || || |||||| Sbjct 2469229 ACCTCAAGGGTGATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCATG 2469179 >seq21 Length=3941259 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || ||||| | || || || || || || ||||| || Sbjct 1372898 ACCCCCACGAAGGCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGC 1372839 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| ||| || || || |||||||| |||| | | ||| || || || || Sbjct 1372838 CAGGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGG 1372779 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| || || ||||| ||||| || | | |||| ||| || | | ||| || Sbjct 1372778 AATCCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCAC 1372719 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||||||||| || || |||||||||||||| Sbjct 1372718 TTCAAGAGTAATGGTCTTGCCGGTCAGGGTCTTAACAAAAATCTGCAT 1372671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420104978250552