Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq922 116 7e-21 >seq922 Length=8123900 Score = 116 bits (128), Expect = 7e-21 Identities = 293/441 (66%), Gaps = 11/441 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||| || || ||||| || |||||| ||| ||||| || | |||||| Sbjct 2993612 CTTGCTTTCTTTGCAGCTTCTGATGGTATAGTCCTTGAAAACCTTGCGGGTCGATTCATG 2993671 Query 42483 AAAGAGGTGCAGTACTTT--GAGGC--GCGCTGCTTCTACGGCTTCCAGATAGCCATAGA 42538 || ||||| || | || ||||| | ||| ||||| ||||||||||| ||||| || Sbjct 2993672 AAGGAGGTTCA--AGTTGCAGAGGCTAGGGCT--TTCTATGGCTTCCAGATCGCCATTGA 2993727 Query 42539 GAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA 42598 ||| | ||||||||| ||||| | |||| | | |||||| |||| || || Sbjct 2993728 AAACATCCACTCTGAGATGTACAGCCTCTTGCTTGAATCTTACATCAAGGATTCCAGTGA 2993787 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | | | |||||| ||| | || ||| | ||||| | || || || ||||| Sbjct 2993788 GAAGAGTCGATTGTTCAGGGCTGTTGAAACGGTTCCCTGTGTTGCCAAAAAAGCAGACTG 2993847 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 |||||| || |||||| | | || | | | || | |||||| || | || ||| | Sbjct 2993848 GGCGCTAAAATGGATC---AATTCCTCTGAATCTTTTGCAGAGAGGTTGATTGCTTTTGC 2993904 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 | || || || |||||||| || || || ||||| || ||||| || | | Sbjct 2993905 CTGTGTTGAAGGTATCTTCTTTTCTGGTAGTTTTTGTTCCATATTTTGGCTAAAAAAAAG 2993964 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 || | ||||| || | |||||||| || |||||||| || || || || | || Sbjct 2993965 GGGTTTAATGCCTGGTTTAACCTTCTCTAATGAACTCATTTCAAGAGATGAAGGTTTACA 2994024 Query 42839 TAGGGACTTTGCCTGCCTCCT 42859 | || ||||| ||||| || Sbjct 2994025 CTGTGATTTTGCTTGCCTTCT 2994045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944271372836960