Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3426 116 9e-21 seq1199 116 9e-21 seq21 104 6e-17 seq461 96.9 8e-15 >seq3426 Length=3004207 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | |||||| || || ||||||| || ||| || |||||||| || || || Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||||| ||||||||||| || || || ||| |||| Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || ||||| |||||||| || || || || || || | | ||| |||| || Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTC---TCG 2139044 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| || || || || || ||||| ||||||||| Sbjct 2139043 ACCTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATT 2138993 >seq1199 Length=7341449 Score = 116 bits (128), Expect = 9e-21 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| || || ||||||| || ||||| |||||||| || || || || || || Sbjct 1127650 AGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCTAGGGTTCGG 1127709 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| | || || ||||||||||| || || |||||| ||| || || ||| Sbjct 1127710 CCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGTATGCCCTCT 1127769 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGC 288432 || ||||||||||| || || || || || || | ||| |||| || || || || Sbjct 1127770 TTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTC---TCGACCTCAAGA 1127826 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || || ||||| |||||||| Sbjct 1127827 GTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCAT 1127867 >seq21 Length=3941259 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||||||||| || || || || || | || || || | ||| || || || ||| Sbjct 1371950 TCCTTTTGGATATTGTAATCAGCAAGAGTTCTGCCATCCTCAAGTTGCTTACCAGCAAAG 1371891 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| ||| | |||||||| || |||||||| || || || ||||| || Sbjct 1371890 ATGAGCCTCTGCTGATCAGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTA 1371831 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || |||| || |||| || || || || || || |||||||| || || |||||| Sbjct 1371830 TCGATAGTGTCCGAGCTC---TCGACCTCAAGAGTAATGGTCTTCCCAGTGAGGGTCTTG 1371774 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 1371773 ACAAAGATCTGCAT 1371760 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||||| || || || | ||| || || | ||||| || || || Sbjct 1372406 TCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAA 1372347 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | || || | || || || || || || || ||||| || |||||||| Sbjct 1372346 ATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAATTTTAGCCTTCACGTTG 1372287 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| ||| || || || || || ||||| || |||| |||||| Sbjct 1372286 TCAATTGTATCTGAGCT---TTCAACCTCCAGGGTAATGGTCTTGCCAGTCAAGGTCTTG 1372230 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 1372229 ACGAAAATTTGCAT 1372216 >seq461 Length=5900637 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || ||||| || ||||| | ||| || || || ||||||||||||||| Sbjct 2469634 CCCCCACGAAGCCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCG 2469575 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| ||||| || || || || |||| | || || | ||| Sbjct 2469574 AGGGTACGGCCATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGG 2469515 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT--A 288424 ||||| || || |||||||| || || || || || || |||| | || | ||| | Sbjct 2469514 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAG--TGTCTGAACTCTCAA 2469457 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || | ||||| || || || || || ||||| || || || ||||| Sbjct 2469456 CCTCCAAAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTGCAT 2469408 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || || || || | ||| || || ||||| || || || ||| Sbjct 2470054 TCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAG 2469995 Query 288343 ATCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | |||| | || | ||||| ||||| || ||||| || || | ||||| Sbjct 2469994 ATCAGCCTTTGCTGGTCAGGA---GGGATGCCTTCCTTGTCCTGAATCTTTGACTTCACA 2469938 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || || || | ||||||||||| || ||||| ||| Sbjct 2469937 TTATCGATGGTGTCCGAGCTC---TCAACCTCCAATGTGATCGTCTTACCAGTCAGGGTC 2469881 Query 288457 TTGACGAATATCTGCAT 288473 ||||| || || ||||| Sbjct 2469880 TTGACAAAAATTTGCAT 2469864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179567553105788