Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq461 109 6e-19 seq1199 105 7e-18 seq3426 98.7 1e-15 seq21 96.9 4e-15 seq3001 93.3 5e-14 >seq461 Length=5900637 Score = 109 bits (120), Expect = 6e-19 Identities = 158/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| || | ||| | ||| |||||| || |||||||||||||| || |||| | | Sbjct 2470306 CGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCA 2470247 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || ||||| | ||||||||| | ||| | || ||||||| Sbjct 2470246 TCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTG 2470187 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| |||| | |||| | | | || || |||| ||||| || | || Sbjct 2470186 TCC-TGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTC---TCCACCTCAAGGGT 2470131 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || || || ||||| ||||| || ||||| Sbjct 2470130 AATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCAT 2470092 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||||||||| ||||| || || ||||| || | || ||| Sbjct 2469844 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACCATCCTCT 2469785 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||||||||||| ||||| | ||| ||||||| || | | ||||||||| | Sbjct 2469784 AATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCCTGG 2469725 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 || ||| |||| | | | || || |||| || || || | || ||||| Sbjct 2469724 ATCTTTGCCTTGACATTATCAATGGTATCCGAGCTC---TCAACCTCCAGGGTAATGGTC 2469668 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || || || |||||||| ||||| Sbjct 2469667 TTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | ||| |||||| || |||||||||||||||||||||| | || || Sbjct 2470072 ACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCCTCC 2470013 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||| || || || || || | |||||||| | || | || ||||||||| || Sbjct 2470012 AATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGATGCCTTCCTTGTCC-TG 2469954 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 | | |||| || | | | | ||||| |||| || || || | ||||| || Sbjct 2469953 AATCTTTGACTTCACATTATCGATGGTGTCCGAGCTC---TCAACCTCCAATGTGATCGT 2469897 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| ||||| |||||||| Sbjct 2469896 CTTACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 42011 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 42070 |||| ||||||||| || || || ||||| ||||| || | || || | ||||| || Sbjct 2469149 TGTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGGCCATCCTCCAATTGCTTTCC 2469090 Query 42071 AGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 42130 ||| || || | || ||||||||| | || | || ||||||||| || ||| || Sbjct 2469089 AGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTTGCCTT 2469030 Query 42131 GAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 42187 | | | | ||||| |||| || || || | ||||||||||| || ||||| Sbjct 2469029 TACATTGTCTATGGTGTCAGAGCTC---TCAACCTCCAGGGTGATGGTTTTCCCAGTTAG 2468973 Query 42188 CGTCTTTACAAAGATTTGCAT 42208 || || |||||||| ||||| Sbjct 2468972 GGTTTTAACAAAGATCTGCAT 2468952 >seq1199 Length=7341449 Score = 105 bits (116), Expect = 7e-18 Identities = 165/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | | || |||| ||| | || ||| || || ||||||||||| || Sbjct 1127641 CCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCT 1127700 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||||||||| ||||| ||||| || || || || | ||| Sbjct 1127701 AGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGT 1127760 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || ||| |||||| |||||| |||| | | | ||| || |||| || Sbjct 1127761 ATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTC---TCG 1127817 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCA 42213 || || | || ||||| ||||| ||||| || ||||| ||||| ||||| |||| Sbjct 1127818 ACCTCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATCTTCA 1127872 >seq3426 Length=3004207 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | | || |||| ||| | || ||||| || |||||||||||||| Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||| || || ||||| ||||| || ||||| || | ||| Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || ||| |||||| ||| || |||| | | || || || |||| || Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTC---TCG 2139044 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || || | || ||||| || |||||||| || || || ||||| ||||||||| Sbjct 2139043 ACCTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTTC 2138990 >seq21 Length=3941259 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | |||| ||||||||| |||||||||||||| ||||| | | || || Sbjct 1371969 CACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTGCCATCCTC 1371910 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||||||||| || ||||| | |||||| || | || | | |||||| ||| | Sbjct 1371909 AAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCCTTATCC-T 1371851 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || | || | || | | | | ||||| |||| || || || | || |||| Sbjct 1371850 GAATCTTGGCCTTCACATTATCGATAGTGTCCGAGCTC---TCGACCTCAAGAGTAATGG 1371794 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || ||||| |||||||| ||||| Sbjct 1371793 TCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||| | || ||| || || || ||||| || || |||||||| | || || Sbjct 1372197 CACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTC 1372138 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||||||||| || || |||| |||||||| | || | | |||||||| | | Sbjct 1372137 GAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGT-CTT 1372079 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || | || | | ||| | | | ||||| |||| || || |||| || |||| Sbjct 1372078 GAATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTC---TCGACCTCGAGAGTAATGG 1372022 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || ||||| |||||||| ||||| Sbjct 1372021 TCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||||||||| | |||| |||||| || |||||||| || || || ||||| | || Sbjct 1372655 CAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCATC 1372596 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || ||||| || ||||| || || || | ||||||||| | || | | |||||| | Sbjct 1372595 CTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCCTTAT- 1372537 Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGA 42171 | ||| |||| | || | | | | || || |||| || || || | || | Sbjct 1372536 CTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTC---TCAACCTCCAAGGTAA 1372480 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || | || || ||||| |||||||| Sbjct 1372479 TGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 >seq3001 Length=2574463 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | || ||| | ||| | ||| ||||| || |||||||||||||| Sbjct 511769 ACCACCTCTCAACCTCATCACAAGATGAAGGGTGGATTCCTTCTGTATATTGTAATCAGC 511710 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| ||| | |||||||| ||||| ||||| ||||| |||| || ||||| | || Sbjct 511709 AAGAGTTCGCCCATCATCTAGTTGCTTGCCAGCAAATATCAGTCTTTGTTGGTCAGGAGG 511650 Query 42101 CACGCTCTCCTTGTCC 42116 | | |||||| ||| Sbjct 511649 AATTCCCTCCTTATCC 511634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543173783740640