Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq461 113 5e-20 seq21 113 5e-20 seq3426 111 2e-19 seq1199 111 2e-19 seq2419 89.7 5e-13 seq5571 86.0 6e-12 seq741 86.0 6e-12 seq5 84.2 2e-11 seq3001 82.4 8e-11 >seq461 Length=5900637 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | || ||||| | |||| || || || |||||||||||||||||||| Sbjct 2469406 CCGCCTCGAAGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCA 2469347 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || | |||||| || ||| | ||||||| ||||| |||||||| Sbjct 2469346 AGAGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGG 2469287 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || || || ||||||| || | ||||| | || || Sbjct 2469286 ATCCCTTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACC 2469227 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || | ||||| ||||| |||||||| Sbjct 2469226 TCAAGGGTGATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2469180 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||||| || || || || || || |||||||| || Sbjct 2470319 ACCACCACGAAGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGC 2470260 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | | | |||||||||||||| || ||| | ||||||| ||||||||| || || Sbjct 2470259 AAGGGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGG 2470200 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || ||||| ||| ||| || | ||||| | ||||| Sbjct 2470199 GATGCCCTCCTTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCAC 2470140 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || || | ||| || || ||||| ||||| Sbjct 2470139 CTCAAGGGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCAT 2470092 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || |||||||||||||| || |||| || || | || || | ||||| || Sbjct 2469832 GTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACCATCCTCTAATTGCTTACCA 2469773 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||||| ||| ||||||||||| || ||||| || || || || ||| ||| Sbjct 2469772 GCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTTTGCCTTG 2469713 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||| | || || || | || | |||||| || |||| ||| Sbjct 2469712 ACATTATCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATGGTCTTTCCAGTCAGGGTT 2469653 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 2469652 TTAACAAAGATCTGCAT 2469636 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | |||||||| ||||| | || || || || ||||| || || || || Sbjct 2469635 ACCCCCACGAAGCCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGC 2469576 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || | ||||| | ||||| |||||| |||| | || |||||||| || || Sbjct 2469575 GAGGGTACGGCCATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGG 2469516 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| ||| || | || || || || Sbjct 2469515 GATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAACTCTCAAC 2469456 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||| || || || | || || || ||||||||||| Sbjct 2469455 CTCCAAAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTGCAT 2469408 >seq21 Length=3941259 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || || || || || || ||||| || || | ||| || | || || Sbjct 1372652 CACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCATCCTC 1372593 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 |||||| ||||| ||| |||| |||| ||||||||| || || ||||| || || ||||| Sbjct 1372592 AAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCCTTATCTTG 1372533 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 ||||| ||| || || | |||||| | || || || | || | |||||| Sbjct 1372532 AATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACCTCCAAGGTAATGGTCTT 1372473 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| ||||| || ||||||||||| Sbjct 1372472 GCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| || || || || || || | ||| | | || |||||||| Sbjct 1372418 TGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCAAGCTGT 1372359 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| |||| |||| |||||||| || ||||| || || || ||||| ||||| Sbjct 1372358 TTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAATTTTA 1372299 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | |||||| | || || || | || | ||||||||| ||| Sbjct 1372298 GCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTTGCCAGTC 1372239 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || |||||||||||||| Sbjct 1372238 AAGGTCTTGACGAAAATTTGCAT 1372216 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || || || || || || ||||| || || | ||| || | || Sbjct 1372882 AGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCATCC 1372823 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || | || |||||| || || ||||| || || || ||| Sbjct 1372822 TCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCT 1372763 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||| | |||||||| | ||| | |||| Sbjct 1372762 TGGATCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATGGTC 1372703 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||||||| || || || ||||| |||||| Sbjct 1372702 TTGCCGGTCAGGGTCTTAACAAAAATCTGCATT 1372670 >seq3426 Length=3004207 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || || ||||||| || ||||| || || || |||||||| || | || || | Sbjct 2139209 TCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCTAGTGTTCGGCC 2139150 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||||||||| ||||| || | ||||| || ||||| || || || || || ||||| Sbjct 2139149 ATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGGATGCCCTCTTT 2139090 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||| ||| || ||||||||| | || || || | || | Sbjct 2139089 GTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACCTCAAGGGTAAT 2139030 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || || | ||||| ||||| || |||||||| Sbjct 2139029 GGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2138991 >seq1199 Length=7341449 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || || ||||||| ||||| ||||| || || |||||||| || | ||| || | Sbjct 1127652 TCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCTAGGGTTCGGCC 1127711 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| |||||||| || || | ||||| || || || || || || || || ||||| Sbjct 1127712 ATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGTATGCCCTCTTT 1127771 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || ||||| ||| ||| || | ||||| | || || || | ||| | Sbjct 1127772 GTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACCTCAAGAGTAAT 1127831 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||||| || | ||||||||||| || ||||| || Sbjct 1127832 GGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATCTT 1127870 >seq2419 Length=5026 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||||| || || || |||| ||||| || ||||| ||||||||||| || Sbjct 4998 CCTCCCCTCAATCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCC 4939 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || |||||||| || ||| | || | ||||||||||| || || Sbjct 4938 AATGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGGGGG 4879 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || ||||| || || ||| ||| || | || || | || || Sbjct 4878 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCCGAGCTCTCAACC 4819 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||||| || | || || || || || ||||| Sbjct 4818 TCAAGAGTAATAGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 4772 >seq5571 Length=10537363 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || ||||||||||| || | ||| || | || Sbjct 10537235 AGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGACCATCC 10537294 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | ||||||| ||||||||||| || || ||||| || ||| Sbjct 10537295 TCGAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCGGGGGGGATGCCTTCCTTGTCT 10537354 Query 64352 TGTAT 64356 || || Sbjct 10537355 TGAAT 10537359 >seq741 Length=6196301 Score = 86.0 bits (94), Expect = 6e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || |||||||||||||| |||| ||||| | |||||||||||||| || ||| | || Sbjct 2013513 TTCTGAATGTTGTAATCAGCGAGAGTGCGACCATCTTCAAGCTGCTTTCCAGCAAAGATC 2013454 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || || ||||| || |||||||||||| Sbjct 2013453 AGGCGTTGCTGATCCGGAGGAATTCCT 2013427 >seq5 Length=3793322 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || ||||||||||| || | ||| || | || Sbjct 128 AGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGACCATCC 69 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | ||||||| ||||||||||| || || ||||| || ||| Sbjct 68 TCGAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCGGG-GGGATGCCTTCCTTGTCT 10 Query 64352 TGTATTTT 64359 || || || Sbjct 9 TGAATCTT 2 >seq3001 Length=2574463 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| || | ||| ||||||| || ||||| || || || |||||||| || Sbjct 511769 ACCACCTCTCAACCTCATCACAAGATGAAGGGTGGATTCCTTCTGTATATTGTAATCAGC 511710 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || ||| | || || || |||||||| ||| | || || | || ||||| ||||| Sbjct 511709 AAGAGTTCGCCCATCATCTAGTTGCTTGCCAGCAAATATCAGTCTTTGTTGGTCAGGAGG 511650 Query 64336 AATTCCTTCTTTTTC 64350 |||||| || || || Sbjct 511649 AATTCCCTCCTTATC 511635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499608913012240