Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq461 104 2e-17 seq21 87.8 2e-12 >seq461 Length=5900637 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| || || | | | ||||||||||||||||||||||| | |||||| ||||| Sbjct 2469845 AACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACCATCCTC 2469786 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | ||| ||||| | |||| || | ||||||||| ||||| || ||||| ||||| Sbjct 2469785 TAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCCTG 2469726 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 ||| ||| || | | || | ||| || | ||| ||||| | || | || || Sbjct 2469725 GATCTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATGGTCTT 2469666 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| ||||| ||||| |||||||| Sbjct 2469665 TCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||| ||||| | |||||| ||||| | ||| || || | | Sbjct 2469145 GACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCA 2469086 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | |||| | ||| ||||| || || || ||||| ||||| || ||| |||| | Sbjct 2469085 AAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTTGCCTTTACA 2469026 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||| ||||| | || | ||||| ||||| || ||||| Sbjct 2469025 TTG-TCTATGGTGTCAGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTTAGGGTTTT 2468967 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2468966 AACAAAGATCTGCAT 2468952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | | |||||||| || || ||||| || || ||| | ||||| Sbjct 2470072 ACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCCTCC 2470013 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||| || |||| | |||| || | || ||||| ||||| || ||||| ||||| || Sbjct 2470012 AATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGATGCCTTCCTTGTCC-TG 2469954 Query 138526 ATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | | |||| || | | || | |||||| | ||| ||||| | || | ||| || Sbjct 2469953 AATCTTTGACTTCACATTATCGATGGTGTCCGAGCTCTCAACCTCCAATGTGATCGTCTT 2469894 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||| || || |||||||| ||||| Sbjct 2469893 ACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 >seq21 Length=3941259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| | ||| || ||||||||||| ||||| | | Sbjct 1372181 GACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTCGAGTTGCTTACCAGCA 1372122 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | ||||| | || ||||| ||||| ||||| || ||||| ||| | || | || | Sbjct 1372121 AAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTC-TTGAATCTTGGCCTTCAC 1372063 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | ||| ||||||| || | || || ||||| || || | Sbjct 1372062 GTTG-TCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTCCCAGTGAGGGTCT 1372004 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 1372003 TGACAAAGATCTGCAT 1371988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496226755953120