Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq461 105 5e-18 seq21 82.4 5e-11 >seq461 Length=5900637 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || ||||| |||||||| || |||| | | | || || Sbjct 2469845 AACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACCATCCTC 2469786 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||| || |||||| | || | | |||||||||| || || ||||||||||| Sbjct 2469785 TAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCCTG 2469726 Query 15087 AAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || ||||| || ||| | || || ||||| | || || || | ||||||||| | Sbjct 2469725 GATCTTTGC-CTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATGGTCT 2469667 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || ||||| ||||| ||||| || |||||| Sbjct 2469666 TTCCAGTCAGGGTTTTAACAAAGATCTGCATA 2469635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | ||| || | || ||||| ||||| || || || || || |||||||| Sbjct 2470092 TGCCACCCCTCAACCTGAGGACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAG 2470033 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | || | || || ||||| ||||| || | |||| | || ||||| | Sbjct 2470032 CCAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAG 2469973 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||| || || ||| | || || || || | || | Sbjct 2469972 GGATGCCTTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCCGAGCTCTCAA 2469913 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || ||||| ||||| || || ||||||||||||||| Sbjct 2469912 CCTCCAATGTGATCGTCTTACCAGTCAGGGTCTTGACAAAAATTTGCATA 2469863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| ||||| | || | || || ||||||||||| || ||||| ||||||||||| Sbjct 2469408 TGCCGCCTCGAAGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTG 2469349 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || || || || || ||||| | || | | || || ||| | Sbjct 2469348 CAAGAGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAG 2469289 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| |||||| | || |||||||| | || | Sbjct 2469288 GGATCCCTTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGA 2469229 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| || || || || || || ||||| || || |||||||| Sbjct 2469228 CCTCAAGGGTGATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2469180 >seq21 Length=3941259 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || || || ||||| || || || || || || || ||||| ||| || | | | Sbjct 1372657 CTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCA 1372598 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 || || | ||||||||||| | || | | ||| ||||| || ||||| ||||| Sbjct 1372597 TCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCCTTA 1372538 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||||||| || || | || || ||||| | || || || ||||||||| Sbjct 1372537 TCTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACCTCCAAGGTAATG 1372478 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||| ||||| |||||||||||||| Sbjct 1372477 GTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357366972061610