Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq21 131 2e-25 seq1199 118 1e-21 seq461 114 1e-20 seq3426 107 2e-18 >seq21 Length=3941259 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | || ||||| || || |||||||| || ||| || ||| ||| || Sbjct 1372880 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCATCCTC 1372821 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| ||||||| | ||||||||| || || || ||||||||||| Sbjct 1372820 GAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCTTG 1372761 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| ||| ||| | | || | ||| |||| || || ||||| | || | || || Sbjct 1372760 GATCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATGGTCTT 1372701 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||||| || || |||||||||||||| Sbjct 1372700 GCCGGTCAGGGTCTTAACAAAAATCTGCAT 1372671 Score = 102 bits (112), Expect = 8e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 |||||||||||| | || ||||| || || |||||||| ||| | | || || ||| Sbjct 1372655 CAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCATC 1372596 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || |||||||| ||||| | || | | |||||| || || || || |||||||| || Sbjct 1372595 CTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCCTTATC 1372536 Query 127021 CGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 ||||| ||| | | || | || |||| ||||| || || | ||| | || Sbjct 1372535 TTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACCTCCAAGGTAATGGT 1372476 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| |||| ||||| |||||||| |||||| Sbjct 1372475 CTTGCCAGTCAAGGTTTTGACAAAAATTTGCATG 1372442 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | ||||||||||| || || ||||| ||| | | || ||| ||| || Sbjct 1372197 CACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTC 1372138 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || || || ||||| | || | || ||||| || ||||| || ||||||||||| Sbjct 1372137 GAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCTTG 1372078 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || || ||| | |||| || | ||||| | |||||||| |||| || | || | Sbjct 1372077 AATCTTGGCCTTCACGTTG-TCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCT 1372019 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || || || ||||| |||||||| Sbjct 1372018 TCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| |||| || ||||| ||||| ||||||||||| | | || | ||| || Sbjct 1371969 CACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTGCCATCCTC 1371910 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || || || ||||| |||| | | ||||||||| || || || |||||||| ||| Sbjct 1371909 AAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCCTTATCCTG 1371850 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||| | | |||| ||||||| |||||||| || | || | || || Sbjct 1371849 AATCTTGGCCTTCACATTATCGATAGTGTCCGAGCTCTCGACCTCAAGAGTAATGGTCTT 1371790 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| |||||||| Sbjct 1371789 CCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 >seq1199 Length=7341449 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 ||||| || | | || || |||| ||| | || |||||||| || ||||||||||| Sbjct 1127638 GCTCCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCC 1127697 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || || ||| || ||||| || || ||| |||| | || || ||||| || Sbjct 1127698 GCTAGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGT 1127757 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 ||||||||||| |||||| |||||| ||||| | |||| || || | |||||| Sbjct 1127758 GGTATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCG 1127817 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || ||||| || || |||||||| || |||||||| Sbjct 1127818 ACCTCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCAT 1127867 >seq461 Length=5900637 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | ||| | || ||||| || || ||||||||||| | Sbjct 2470318 CCACCACGAAGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCA 2470259 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || ||||| || ||||| |||| | | |||||| || || || Sbjct 2470258 AGGGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 2470199 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| |||||| ||||| | || | ||| || | ||||| || Sbjct 2470198 ATGCCCTCCTTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCACC 2470139 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || || ||||| || ||||||||||||||| Sbjct 2470138 TCAAGGGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCATG 2470091 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | |||||||| |||||||| |||||||| | | |||||| ||| || Sbjct 2469389 CACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCAAGAGTGCGACCATCCTC 2469330 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | ||| || ||||| |||| | | |||||||||||||| || || ||||||||| Sbjct 2469329 CAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGGATCCCTTCCTTGTCCTG 2469270 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||| | | || | || || | |||||||| || | ||| | || || Sbjct 2469269 GATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACCTCAAGGGTGATTGTCTT 2469210 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || ||||| || || || |||||| Sbjct 2469209 CCCAGTTAGGGTTTTGACGAAGATTTGCATG 2469179 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || ||||| || || ||||||||||| ||| || | ||| || Sbjct 2470072 ACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCCTCC 2470013 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | || || || || |||||| | ||||| || ||||| ||||| ||||||||| || Sbjct 2470012 AATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGATGCCTTCCTTGTCC-TG 2469954 Query 127025 ATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | | | || ||| | | |||| |||||||| ||||| || || | || | ||| || Sbjct 2469953 AATCTTTGACTTCACATTATCGATGGTGTCCGAGCTCTCAACCTCCAATGTGATCGTCTT 2469894 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || |||||||| ||||| Sbjct 2469893 ACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| ||| | || ||||| || |||||||| || ||| | | || || ||| || Sbjct 2469617 CACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCGAGGGTACGGCCATCTTC 2469558 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | || || || || | ||||| | ||||| || || || || |||||||||||| Sbjct 2469557 CAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 2469498 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||| | | || | ||||| | |||||| || || | || | ||||| Sbjct 2469497 GATCTTGGCCTTAACATTATCAATAGTGTCTGAACTCTCAACCTCCAAAGTGATGGTTTT 2469438 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || || || |||||||| |||||| Sbjct 2469437 ACCAGTGAGGGTCTTCACAAAAATTTGCATG 2469407 >seq3426 Length=3004207 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | ||||| || || || ||||||||||| | | || || ||| || Sbjct 2139202 ACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCTAGTGTTCGGCCATCTTCA 2139143 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| || ||| |||| | || |||||||| || || |||||||| |||||| | Sbjct 2139142 AGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCCTGG 2139083 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | || || || || | |||||||| || | ||| | || || Sbjct 2139082 ATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACCTCAAGGGTAATGGTCTTA 2139023 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| || || |||||||| Sbjct 2139022 CCCGTTAGGGTTTTCACGAAGATCTGCAT 2138994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475466647155040