Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq21 104 2e-17 seq461 100 3e-16 >seq21 Length=3941259 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| |||||||||||||| | ||| || || || ||||| |||||||| || ||| Sbjct 1372672 ATTCCTCCACGGAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCG 1372613 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||| || || | || | | |||||||| ||| Sbjct 1372612 GCAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGC 1372553 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || |||||||||||||| || | || | || | || || || ||| Sbjct 1372552 GGGATTCCCTCCTTATCTTGAATTTTGGCCTTCA-CGTTATCAATTGTATCCGAGCTCTC 1372494 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| || ||||| || | ||||| |||||||||||||| Sbjct 1372493 AACCTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 >seq461 Length=5900637 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | |||||| | || || || || || || ||||||||||| ||||| || Sbjct 2469181 ATGCCACCCCTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTATAGTCA 2469122 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||||||| ||||| || | || |||| |||||||| || Sbjct 2469121 GCAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGG 2469062 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || ||| || | |||| |||||| || ||| Sbjct 2469061 GGAATGCCTTCCTTGTCCTGTATCTTTGCCTTTACATTGTCTATGGTGTCAGAGCTCTCA 2469002 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||| || ||||| ||||| ||||| || ||||| Sbjct 2469001 ACCTCCAGGGTGATGGTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | ||| ||||| || || || ||||| || |||||||| ||| Sbjct 2469637 ATACCCCCACGAAGCCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCG 2469578 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||||||| || || || | ||||| | ||||||||| || Sbjct 2469577 GCGAGGGTACGGCCATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGG 2469518 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || || || || | || | ||||| ||| ||| Sbjct 2469517 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAACTCTCA 2469458 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | ||||| || || || || || |||||||||||||| Sbjct 2469457 ACCTCCAAAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTGCAT 2469408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || ||||| |||||||| ||||| | || | ||| |||||||| Sbjct 2470067 ATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCCTCCAATTG 2470008 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || || | |||| | ||||||||| || || |||||||| || || ||||| || Sbjct 2470007 CTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTT 2469948 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | || | || | |||||| || ||| || || | || | ||| || || || Sbjct 2469947 TGACTTCACATTATCGATGGTGTCCGAGCTCTCAACCTCCAATGTGATCGTCTTACCAGT 2469888 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||||||||| Sbjct 2469887 CAGGGTCTTGACAAAAATTTGCAT 2469864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451970734870160