Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2758 141 1e-28 seq5085 84.2 3e-11 >seq2758 Length=2366178 Score = 141 bits (156), Expect = 1e-28 Identities = 203/284 (71%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || ||||| || || ||||| |||||| |||||| ||||| || || || Sbjct 1358545 ATCAAACCGCCCTGGACGAAGCAGGGCAGAGTCAAGAATATCAGCACGGTTAGTTGCAGC 1358486 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 || |||| ||| ||||| | | ||||| |||||||| ||||||||||| ||||||| Sbjct 1358485 TATCACAATGATACCCGTGTTGCCTTCGAAACCATCCATTTCAGTCAAGAGCTGATTGAG 1358426 Query 12824 GGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACG 12881 ||||| || | ||||||||| | | | | | ||||| | | |||| |||| || Sbjct 1358425 TGTTTGCTCCCTCTCATCATTCCC--ACCTCCAATTCCCGCCCCCCTTTGCCTACCAACT 1358368 Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 12941 || ||||| || |||| || ||||| || || |||||| || | |||| Sbjct 1358367 GCATCAATCTCATCAACAAACACGATGCAAGGAGCATTTTCCTTTGCTTTCTTGAAGAGG 1358308 Query 12942 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 || || || || ||||| ||||||||||||||||| ||||| Sbjct 1358307 TCACGGACCCTAGAAGCACCCACACCCACAAACATCTCAACAAA 1358264 >seq5085 Length=15980527 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 117136 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG 117195 ||||||||||| || ||| ||||||||| || |||| || ||| ||||| || || Sbjct 1682089 TGTGGCCTTGGAGTCCCACTGTTGAAGAGTGTGGGTGAAGCATGGTTGAACCAACGCTGT 1682148 Query 117196 GACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAG 117255 |||||| | ||| || | || | |||| | ||| || || ||||| |||| Sbjct 1682149 GACATCAGGTGGTATGTTTGCATGGCAGAATCCAAGTCATCTTTATGGATACCAATTGCA 1682208 Query 117256 ACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCC-TCTGGAGGTA 117314 || | ||| ||||||| ||||||| |||| || | | || || |||| || | | ||| Sbjct 1682209 ACTCTCATCAACATGTGTTGGGGTCTTTCTATAACCTTGCC-TCCAGCCTTCAGTAAGTA 1682267 Query 117315 ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362 |||| | || |||| ||||||||| || | ||| |||| || Sbjct 1682268 TGATCTCTCTAGAGTTTTGAACCCAAAATAGTCATAATCAAAGTCTCT 1682315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613463134845360