Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq461 161 2e-34 seq2419 116 9e-21 seq21 114 3e-20 seq3426 109 1e-18 seq1199 93.3 1e-13 seq5571 86.0 1e-11 seq5 84.2 5e-11 >seq461 Length=5900637 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || ||||| | ||||| || |||||||| |||| ||||| ||||||| |||||||||| Sbjct 2470078 CTGAGGACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCA 2470019 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 || |||| ||||| ||||| ||||| || | |||||||| ||| || ||||| Sbjct 2470018 TCCTCCAATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGATGCCTTCCTTG 2469959 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 |||||||||||| |||||| |||| |||||| | | || || ||||| |||||| Sbjct 2469958 TCCTGAATCTTTGACTTCACATTATCGATGGTGTCCGAGCTCTCAACCTCCAATGTGATC 2469899 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || || || ||||||||||| Sbjct 2469898 GTCTTACCAGTCAGGGTCTTGACAAAAATTTG 2469867 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || |||||||||||||| || ||||||||||||| ||| |||||||| | ||| | Sbjct 2469169 AGCCTGAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGG 2469110 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| |||||||| || || || | | ||||||||| || ||| ||||| Sbjct 2469109 CCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCC 2469050 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| |||||| ||| || || | |||||| | | || || |||| ||| Sbjct 2469049 TTGTCCTGTATCTTTGCCTTTACATTGTCTATGGTGTCAGAGCTCTCAACCTCCAGGGTG 2468990 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| ||||| || || Sbjct 2468989 ATGGTTTTCCCAGTTAGGGTTTTAACAAAGATCTG 2468955 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || |||||||||||||| || |||||||| |||| ||| || ||||| | || | | Sbjct 2468941 AGCCTGAGGACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCAAGTGTACGT 2468882 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| |||||||| || || || | | ||||||||| || || ||||| Sbjct 2468881 CCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGGATGCCTTCC 2468822 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| |||||| ||| || |||| |||||| | | ||||| || | ||| Sbjct 2468821 TTGTCCTGGATCTTTGCCTTTACATTGTCGATGGTGTCAGAGCTCTCTACCTCGAGAGTG 2468762 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || | || || ||||| || || Sbjct 2468761 ATGGTCTTTCCAGTCAAGGTCTTAACAAAGATCTG 2468727 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| || || || | |||||| || ||||||||||| | ||||||||| || | ||| Sbjct 2469856 CGAAGCCTGAGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTA 2469797 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || | ||||| || ||||||||||| | ||| ||||| ||| || ||| Sbjct 2469796 CGACCATCCTCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCT 2469737 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| || || | ||| || | | || || |||| Sbjct 2469736 TCCTTGTCCTGGATCTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAGG 2469677 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| ||||| || || Sbjct 2469676 GTAATGGTCTTTCCAGTCAGGGTTTTAACAAAGATCTG 2469639 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| || || || || ||||| || |||||||| || | || ||||| || | || Sbjct 2469628 CGAAGCCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCGAGGGTA 2469569 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||| ||||| || || | | |||||||| || ||||| Sbjct 2469568 CGGCCATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCC 2469509 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || || | ||||||| | || || ||||| Sbjct 2469508 TCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAACTCTCAACCTCCAAA 2469449 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| ||||| || |||||||||||||| Sbjct 2469448 GTGATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTG 2469411 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| || || || | ||| || || ||||||||||| | |||||| || || | ||| Sbjct 2469401 TCGAAGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCAAGAGT 2469342 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| |||| |||||| || || |||||||| | ||||| || ||| || || Sbjct 2469341 GCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGGATCCC 2469282 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| || || | || |||| | || || || | Sbjct 2469281 TTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACCTCAAG 2469222 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || ||||| || || ||||| Sbjct 2469221 GGTGATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTG 2469183 >seq2419 Length=5026 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || |||||||||||||||| |||||| || ||||| || | ||||| Sbjct 4983 AGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCCAATGTACGGCCATCC 4924 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| || ||||| | ||||||||||| || ||||| || || Sbjct 4923 TCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGGGGGATTCCCTCCTTATCT 4864 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | || || || | || || ||| Sbjct 4863 TGGATCTTAGCCTTAACATTGTCAATGGTGTCCGAGCTCTCAACCTCAAGAGTAATAGTC 4804 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| || || Sbjct 4803 TTGCCTGTAAGGGTCTTAACAAAGATCTG 4775 >seq21 Length=3941259 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| || || || | ||| || || ||||||||||||| ||||| ||||| | ||| Sbjct 1371980 CGAAGCCTGAGCACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTT 1371921 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| || || ||||| || || |||||||| | |||||| || || ||||| Sbjct 1371920 CTGCCATCCTCAAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCC 1371861 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| |||| ||||| | | || || || | Sbjct 1371860 TCCTTATCCTGAATCTTGGCCTTCACATTATCGATAGTGTCCGAGCTCTCGACCTCAAGA 1371801 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || ||||| || || Sbjct 1371800 GTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTG 1371763 Score = 96.9 bits (106), Expect = 8e-15 Identities = 153/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| || || |||| || ||||| ||||| || |||| || |||||||| | ||| Sbjct 1372435 CGAAGCCTGAGACCAAG-TGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTC 1372377 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || ||||| || || || || || || | |||||||| || ||| || Sbjct 1372376 CTTCCATCCTCAAGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCC 1372317 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| || ||||||| || | || |||| |||| || |||| Sbjct 1372316 TCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGG 1372257 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || || || |||||||| Sbjct 1372256 GTAATGGTCTTGCCAGTCAAGGTCTTGACGAAAATTTG 1372219 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || |||| || | ||||| || |||||||| |||| |||||||| || | ||| Sbjct 1372663 CGGAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTC 1372604 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||| || || || || || || | ||||||||| || ||||| Sbjct 1372603 CGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCC 1372544 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| || ||||||| || | || || | | || || ||||| Sbjct 1372543 TCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACCTCCAAG 1372484 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | ||||| ||||||||||| Sbjct 1372483 GTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTG 1372446 >seq3426 Length=3004207 Score = 109 bits (120), Expect = 1e-18 Identities = 159/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||||||| || || || ||||| || ||||| |||| ||||| ||||| | || | Sbjct 2139211 AGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCTAGTGTTCGG 2139152 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| ||||| || || ||||||||||| || ||||| || || || || ||| Sbjct 2139151 CCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGGATGCCCTCT 2139092 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||| || || || || || | | || || || | || Sbjct 2139091 TTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACCTCAAGGGTA 2139032 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || ||||||||||| || |||||||| || || || |||||| Sbjct 2139031 ATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTG---CATTTT 2138991 >seq1199 Length=7341449 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||||||||| || || || ||||||||||| || |||| ||||| || || | || Sbjct 1127646 TCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCTAGGGT 1127705 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| |||||||| || ||||||||||| || || || || || || || Sbjct 1127706 TCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGTATGCC 1127765 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || ||| || |||| || || | | || || || | Sbjct 1127766 CTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACCTCAAG 1127825 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| || || || || Sbjct 1127826 AGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTG 1127864 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| || |||||| | |||||||| | || | || |||||||| ||||| Sbjct 1127741 CTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGATTACAATATCCAG 1127682 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 |||||||| |||||||| || ||| |||||||| || Sbjct 1127681 AAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGA 1127646 >seq5571 Length=10537363 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || |||||||| |||| |||||| || || | || | ||||| Sbjct 10537235 AGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGACCATCC 10537294 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||| | |||||||| || || ||||| || Sbjct 10537295 TCGAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCGGGGGGGATGCCTTCCTTGTCT 10537354 Query 199538 TGAATCT 199544 ||||||| Sbjct 10537355 TGAATCT 10537361 >seq5 Length=3793322 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || |||||||| |||| |||||| || || | || | ||||| Sbjct 128 AGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGACCATCC 69 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || || |||||||| | |||||||| || Sbjct 68 TCGAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCGGG 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178834807054982