Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3426 105 8e-18 seq21 104 3e-17 seq2419 95.1 1e-14 seq1199 93.3 5e-14 seq461 93.3 5e-14 >seq3426 Length=3004207 Score = 105 bits (116), Expect = 8e-18 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | | || |||||||| | ||| ||||| ||||||||||| || | | Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||| ||||| ||||| || | ||| ||||| || | || Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||| |||||| |||||| ||||| | | || || || |||| || Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTC---TCG 2139044 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || | || ||||| || ||||| || ||||| || ||||| |||||||| Sbjct 2139043 ACCTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2138991 >seq21 Length=3941259 Score = 104 bits (114), Expect = 3e-17 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||| | || |||||| |||||||||||||| | || || || | || || Sbjct 1372880 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCATCCTC 1372821 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||| || || || ||||| | |||||| || | || | | ||||||||| Sbjct 1372820 GAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCTTG 1372761 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||||| |||| | | | | || || ||| |||||| || | || ||||| Sbjct 1372760 GATCTTCGTCTTCACATTGTCAATGGTATCCGAGCT---TTCCACTTCAAGAGTAATGGT 1372704 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||||| ||||| || |||||||| || |||||| Sbjct 1372703 CTTGCCGGTCAGGGTCTTAACAAAAATCTGCATT 1372670 >seq2419 Length=5026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || || || | || || || | || |||||||||||| ||||| |||| Sbjct 5000 TGCCTCCCCTCAATCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCGG 4941 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | || ||||||||||| || || || ||||||||||||||||| | | Sbjct 4940 CCAATGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGGG 4881 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | |||||| || |||||| ||| | | | | ||||| |||| | Sbjct 4880 GGATTCCCTCCTTATCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCCGAGCTC---T 4824 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | || || || ||||| || || || ||||||||||| ||||| Sbjct 4823 CAACCTCAAGAGTAATAGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 4772 >seq1199 Length=7341449 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | | || |||||||| | || ||| || ||||||||||| || | | Sbjct 1127641 CCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCT 1127700 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || ||||||||||| || ||||| || | ||| || || || | || Sbjct 1127701 AGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGT 1127760 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||| |||||| ||| || ||||| | | | ||| || |||| || Sbjct 1127761 ATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTC---TCG 1127817 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || | || ||||| ||||| || || ||||| || ||||| ||||| || Sbjct 1127818 ACCTCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATCTT 1127870 >seq461 Length=5900637 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | ||| |||||| || ||||| ||||||| || || || | || || Sbjct 2469617 CACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCGAGGGTACGGCCATCTTC 2469558 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||||| ||||| || ||||| | |||||||| | || | | |||||||||| Sbjct 2469557 CAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 2469498 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGT 46560 |||||| ||| | | | | ||||| ||| || || |||| |||||||| Sbjct 2469497 GATCTTGGCCTTAACATTATCAATAGTGTCTGAACTC---TCAACCTCCAAAGTGATGGT 2469441 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || || ||||| |||||||| Sbjct 2469440 TTTACCAGTGAGGGTCTTCACAAAAATTTGCAT 2469408 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| || ||||| | ||||| || | || || | ||||| || || || Sbjct 2469143 CTCCTTTTGGATGTTATAGTCAGCAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAA 2469084 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || || | ||||||||| | || | || ||||||||| ||||| ||| | | Sbjct 2469083 AATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTTGCCTTTACATT 2469024 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || |||| ||||||||||| || || || ||||| Sbjct 2469023 GTCTATGGTGTCAGAGCTC---TCAACCTCCAGGGTGATGGTTTTCCCAGTTAGGGTTTT 2468967 Query 46579 AACAAAGATTTGCAT 46593 ||||||||| ||||| Sbjct 2468966 AACAAAGATCTGCAT 2468952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||| | ||||| || | || || | ||||| || ||||| Sbjct 2469827 CTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACCATCCTCTAATTGCTTACCAGCGAA 2469768 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||| ||||||| || | | ||||||||| |||||| ||||| | Sbjct 2469767 GATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 2469708 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || |||| || || |||| || ||||| || || ||||| ||||| Sbjct 2469707 ATCAATGGTATCCGAGCTC---TCAACCTCCAGGGTAATGGTCTTTCCAGTCAGGGTTTT 2469651 Query 46579 AACAAAGATTTGCAT 46593 ||||||||| ||||| Sbjct 2469650 AACAAAGATCTGCAT 2469636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565197801751920