Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq461 100 2e-16 >seq461 Length=5900637 Score = 100 bits (110), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || ||||| || || | | || |||| |||||||| || || ||||| Sbjct 2469142 TCCTTTTGGATGTTATAGTCAGCAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAA 2469083 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATCG 39646 ||||| | |||||| || | ||| | |||||| ||||| ||| ||| |||| || | Sbjct 2469082 ATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTTGCCTTTACATTG 2469023 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 || || ||||| | ||| || || |||| || || ||||| || |||| ||||| | Sbjct 2469022 TC--TATGGTGTCAGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTTAGGGTTTTAA 2468965 Query 39707 CGAAGATCTGCAT 39719 | ||||||||||| Sbjct 2468964 CAAAGATCTGCAT 2468952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || |||||||| || | ||| |||| |||||||| || || ||||| Sbjct 2468914 TCCTTCTGGATGTTATAATCAGCAAGTGTACGTCCATCTTCCAATTGCTTTCCAGCAAAA 2468855 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATCG 39646 || || | |||||| || | ||| | |||||| ||||| || ||| |||| || | Sbjct 2468854 ATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTTACATTG 2468795 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | ||||| | ||| || || || | ||| || || || || || || || || | Sbjct 2468794 TCGATG--GTGTCAGAGCTCTCTACCTCGAGAGTGATGGTCTTTCCAGTCAAGGTCTTAA 2468737 Query 39707 CGAAGATCTGCATG 39720 | |||||||||||| Sbjct 2468736 CAAAGATCTGCATG 2468723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347345273924018