Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3426 109 5e-19 seq21 107 2e-18 seq1199 104 2e-17 seq461 89.7 5e-13 seq922 86.0 6e-12 seq2419 82.4 8e-11 >seq3426 Length=3004207 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||| || ||||| || ||||| ||| | || |||||| | Sbjct 2138991 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTTGAGGTCGAGAGC 2139050 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | || | | | || | || |||| ||||||||||| || || | || Sbjct 2139051 TCTGATACAGTTGACAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGAT 2139110 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || ||||| | ||| ||||||||||| || || | || || || || ||| Sbjct 2139111 CAGCAACGCCTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGAACACTAGCTGATTAC 2139170 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| |||||| | || || ||| |||| ||| | | ||||| || Sbjct 2139171 AATATCCAGAAGGAATCTACTCTTCATCTGGTTCTGAGACTCAGAGGAGG 2139220 >seq21 Length=3941259 Score = 107 bits (118), Expect = 2e-18 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || ||||| ||||| ||| | || || ||| | | Sbjct 1372443 ATGCAAATTTTTGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAGGTTGAGAGCTCG 1372502 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 || | | | |||| | || | ||||| | || || |||||||| |||||| |||| Sbjct 1372503 GATACAATTGATAACG-TGAAGGCCAAAATTCAAGATAAGGAGGGAAT-CCCGCCTGACC 1372560 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| |||| || ||||||||||| || || | || ||||| |||||||| Sbjct 1372561 AGCAGAGGCTTATTTTTGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCCGACTACA 1372620 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 | ||||| ||||| | || || ||||||||| || Sbjct 1372621 ATATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 1372655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||| || |||| |||||| | | Sbjct 1371988 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTCGAGGTCGAGAGCTCT 1372047 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| ||||| | ||||| Sbjct 1372048 GACACTATTGACAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCA 1372106 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || |||| || || || || || || || | || || || ||||||||| Sbjct 1372107 GCAAAGACTAATTTTTGCTGGTAAGCAACTCGAGGATGGTCGGACTCTTGCCGACTACAA 1372166 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| || || | || || ||||||||||| Sbjct 1372167 CATCCAGAAAGAGTCTACTCTCCATTTGGTGCT 1372199 >seq1199 Length=7341449 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||||||||| || || ||||| ||||| || | || |||||| | Sbjct 1127870 AAGATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGC 1127811 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | | | || | ||||||| ||||||||||| || || | || Sbjct 1127810 TCCGATACGATCGACAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGAT 1127751 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || ||||| | ||| || || ||||| || || | || ||||| || ||| Sbjct 1127750 CAACAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGATTAC 1127691 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| || || |||| || ||| |||| ||| | | ||||| || Sbjct 1127690 AATATCCAGAAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGAGGAGG 1127641 >seq461 Length=5900637 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || ||||||||||| | || || ||| | Sbjct 2469408 ATGCAAATTTTTGTGAAGACCCTCACTGGTAAAACCATCACTTTGGAGGTTGAGAGTTCA 2469467 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| | || |||| ||||| |||||||| ||| | ||||| Sbjct 2469468 GACACTATTGATAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 2469527 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || || || || |||| || | || |||||| |||||| || Sbjct 2469528 CAAAGGTTGATTTTTGCCGGTAAGCAATTGGAAGATGGCCGTACCCTCGCCGACTATAAT 2469587 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || || ||||| | || || ||| ||||||| Sbjct 2469588 ATTCAGAAGGAGTCCACACTCCATCTGGTGCT 2469619 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || || || ||||| ||| | || || ||| | | Sbjct 2469636 ATGCAGATCTTTGTTAAAACCCTGACTGGAAAGACCATTACCCTGGAGGTTGAGAGCTCG 2469695 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||| |||| ||||| || || || || |||||||| Sbjct 2469696 GATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAA 2469755 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | ||| || || || | || || | || || ||| ||||||||| Sbjct 2469756 CAGAGGCTCATCTTCGCTGGTAAGCAATTAGAGGATGGTCGTACTCTCGCGGACTACAAC 2469815 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || |||||||| | || || || ||||| || Sbjct 2469816 ATTCAAAAGGAGTCCACCCTCCACTTGGTTCT 2469847 >seq922 Length=8123900 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||||||||| || || || || || || || || ||||||||||| || ||| || || Sbjct 2994040 GCAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAA 2993981 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||||| | || | |||||| ||||||||||||| ||||| || |||||||| Sbjct 2993980 ACCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAA 2993921 Query 133014 GA 133015 || Sbjct 2993920 GA 2993919 >seq2419 Length=5026 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| || || || | || || ||| | | Sbjct 4772 ATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACTATTACTCTTGAGGTTGAGAGCTCG 4831 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| || || |||||||| ||| | ||||| Sbjct 4832 GACACCATTGACAATGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCCCCTGACCAG 4891 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || ||||| || || | || || | ||| |||||| Sbjct 4892 CAGCGCTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACATTGGCCGATTACAAC 4951 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| |||| || || | || || || ||||| || ||| Sbjct 4952 ATCCAAAAGGAGTCGACCCTTCACCTTGTCCTCCGATTGAGGGGAGGC 4999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500136875088640