Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3275 161 8e-34 seq233 111 1e-18 seq2710 96.9 3e-14 >seq3275 Length=3666727 Score = 161 bits (178), Expect = 8e-34 Identities = 538/824 (65%), Gaps = 20/824 (2%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | |||||| || || || | |||||| || |||||||| ||||||| | || Sbjct 3066943 GTCATGACACCACCAGCAGTCTCAAGACCAAGGGAGAGAGGAGTAACATCAAGCAAGAGG 3066884 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | | ||| | || |||| | ||| || || || || || | ||| |||||| Sbjct 3066883 AGGTCTTGGACCTTCTCATTGCCCTCTCCACTGAGGATGGCAGCCTGGACAGCTGCACCA 3066824 Query 517616 TATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 || || ||||| ||||| || || | | || || || | || ||||||||||| | Sbjct 3066823 TAGGCCACAGCCTCATCTGGGTTGATGCTCTTGCAG--AGCTCCTTCCCATTGAAAAAGT 3066766 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 | || ||||| ||| | || ||||| | || || ||||| || |||| |||| Sbjct 3066765 CTTGGAGGAGTTGCTGGACCCTTGGGATACGGGTCGAGCCACCAACCAAGACAACATCAT 3066706 Query 517734 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTT-TCAACGGGTTCAAGACC 517791 | | ||| | || |||| || | ||| | || | || ||||| ||||| | || Sbjct 3066705 GGATG-GTGTTCTTGTCCATCTTAGCATC-ACGAAGGCACTTCTCAACTGGTTCCATACA 3066648 Query 517792 CGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 517851 | || || | ||| ||| || |||||| | |||| || | || | | || | Sbjct 3066647 CTTCCTGAAGAGGTCCATGTTAAGCTCCTCGAATCTGGCTCGGGTGATGGT-AGAGTAGA 3066589 Query 517852 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 | ||||| || || | | ||| |||| ||||| || || || | | || || || | Sbjct 3066588 AATCAATACCCTCATAGAGAGAGTCAATCTCAATGGTGGTCTGGGCGGTGGATGAAAGGG 3066529 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATT 517968 ||| || || | ||||| | ||||| | || || | || | |||| | | Sbjct 3066528 TACGCTTGGCCCTCTCACAAGAGGTCCTCAATCGACGGAGAGCACGAG--GATTTCCACT 3066471 Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028 | ||| | || | ||| ||||| || || | ||| | | || | | || || Sbjct 3066470 GATATCCTTCTTGTGTTTCCTCTTAAATTCCTGAACGAAGTGGTTCACCATCCTGTTGTC 3066411 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||| || ||||| ||||| | |||| || | || | | || | |||| ||| || Sbjct 3066410 AAAGTCCTCACCACCCAAGTGGGTATCACCAGCAGTTGACTTGACCTCAAAAATTCCCTC 3066351 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 |||| | | ||||| |||||| || |||||||||| |||||| || | |||||| Sbjct 3066350 CTCAATGGTGAGAAGAGAGACATCAAAAGTGCCACCACCCAAATCAAAGATCAATACATT 3066291 Query 518149 CATTTCTTTGTCT-TGGTTT-----TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 | | || | ||||| || ||||||||||| |||| ||||||||| || || Sbjct 3066290 CTTCTCACCCACACTGGTTGCCTTCTTGTCAAGACCATAGGCAATAGCAGCAGCTGTGGG 3066231 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 ||||| || || | || ||||| || |||||||| || ||||| |||||||| || Sbjct 3066230 CTCATTGATGATACGCATGACATTGAGGCCAGCAATGACACCAGCATCCTTAGTGGCCTG 3066171 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | || || || || ||||| ||||| || || | ||| |||| Sbjct 3066170 GCGCTGGGAGTCATTGAAATAGGCAGGGACTGTGACAACTGCAT 3066127 >seq233 Length=5158861 Score = 111 bits (122), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||||||||| || || ||||| ||||| ||| ||||| |||||||||| Sbjct 4860360 CCATAGGACAGAGCAGCAGCTGTGGGCTCATTGATAATCCTCTGAACATCAAGACCAGCA 4860301 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 |||||||||||||| || || || || || || | ||| |||||||| || || || || Sbjct 4860300 ATTCTTCCTGCATCCTTTGTTGCCTGCCTCTGCGCATCATTAAAATAGGCTGGGACTGTG 4860241 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTTGTTTCATTTTAC 518354 || || || | || || ||| |||| || || || || |||| |||||||| Sbjct 4860240 ATCACAGCTTTGGTCACAGATTTCCCAAGGTA--CGATTCAGCTGTTTCCTTCATTTTTG 4860183 Query 518355 TTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG 518391 | |||| | | |||||| ||| |||||||| Sbjct 4860182 TCAAAACAAAGGCCCCAATTTGGCTTGGAGAATATTG 4860146 >seq2710 Length=11522362 Score = 96.9 bits (106), Expect = 3e-14 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 517136 TTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCA 517195 || ||||| ||||| ||||||| | ||||| |||| |||||||||||| | |||| | Sbjct 1161279 TTCTTATCCTCTTCTGCAAATTCCTCTGCTTCCCTAACCATTCTCTCAATCTCCTCTTGA 1161220 Query 517196 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 517255 || ||||| | || || || || || |||| | || || || ||| || Sbjct 1161219 CTGAGCCTTCCCTTGTCGTTGGTGATGGTGATCTTCTCAGCCTTCTTCGTACCTTTGTCT 1161160 Query 517256 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 517315 | || | ||||| | |||||||||||||| | || || ||||||||||||||||| Sbjct 1161159 TCTGCTCTAACATTCAAGATACCATTGGCATCAACCTCGAAGGTGACTTCAATTTGAGGT 1161100 Query 517316 ACCCCTCT 517323 || ||||| Sbjct 1161099 ACTCCTCT 1161092 Score = 91.5 bits (100), Expect = 1e-12 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 518504 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTG 518563 || || || || || ||||||| || || | ||||| | ||||| |||| || Sbjct 1157606 CCGATCAAACGCTTAACATCAAAGATCGTCCTCTCAGGATTGAGAGCAGCCTGATTCTTA 1157547 Query 518564 GCTGCATCTCCAATCAGATGT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||||| ||||| | || || | ||||| || ||||| | || |||||||||| | | Sbjct 1157546 GCTGCCTCTCCCACCA-ATCTCTCTGTATCGGTAAAAGCCACCCATGATGGAGTGATCCT 1157488 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 |||||| ||||||||||| ||||| || || | ||||| | | || || ||||| Sbjct 1157487 ATTACCCTGATCATTCGCTATAATCTCCACATGTCCATTCTTGTAAACTCCGACACATGA 1157428 Query 518683 AAAAGTTGTTCCTAAATCAATACCAAT 518709 | | |||||||| | |||||| || || Sbjct 1157427 ATACGTTGTTCCAAGATCAATTCCTAT 1157401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780537264552676