Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2758 132 6e-26 seq1809 95.1 2e-14 >seq2758 Length=2366178 Score = 132 bits (146), Expect = 6e-26 Identities = 201/284 (71%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| ||||| || || ||||| |||||| | || || ||||| || Sbjct 1358545 ATCAAACCGCCCTGGACGAAGCAGGGCAGAGTCAAGAATATCAGCACGGTTAGTTGCAGC 1358486 Query 15947 GATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 || |||| ||||| || | | || ||||||||||| || ||||| ||||| || | Sbjct 1358485 TATCACAATGATACCCGTGTTGCCTTCGAAACCATCCATTTCAGTCAAGAGCTGATTGAG 1358426 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 16064 ||||| |||| ||||||||| | | | | | || || | | |||| | || || Sbjct 1358425 TGTTTGCTCCCTCTCATCATTCCC--ACCTCCAATTCCCGCCCCCCTTTGCCTACCAACT 1358368 Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 |||||||||||||||| || |||||||| || |||||| || | ||||| Sbjct 1358367 GCATCAATCTCATCAACAAACACGATGCAAGGAGCATTTTCCTTTGCTTTCTTGAAGAGG 1358308 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 || || || | || |||||||| ||||||||||| ||||| Sbjct 1358307 TCACGGACCCTAGAAGCACCCACACCCACAAACATCTCAACAAA 1358264 >seq1809 Length=9585472 Score = 95.1 bits (104), Expect = 2e-14 Identities = 182/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 16067 ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATC 16126 |||||| |||||||| || | |||| |||| | || | ||| ||| ||| | | Sbjct 7171626 ATCAATTTCATCAATAAATATAATGCTAGGTTCACATTTCCTAGCCTCTTGAAATAATTT 7171567 Query 16127 CCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 || ||| |||| || || |||||||||||||| |||||||| | || | ||| || Sbjct 7171566 CCT--CACTCTTGAAGCTCCAACACCAACAAACATTTCCACAAATTCTGAACCAGAA-AT 7171510 Query 16185 TGGATGAAGGGG-ACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || ||| || ||| |||||||| ||| | ||| || |||||||||||||| | Sbjct 7171509 TGATAGAAATGGCACACGCGATTCACCAGCAGTAGCTTTTGCAAGAAGAGTCTTACCAGC 7171450 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCCAAAGTATC 16302 ||| || ||| | | ||||||||| |||||| || || || | |||| | ||| Sbjct 7171449 ACCAGGAGGTCCCACAAAAAGGGCACCTTTTGGAATTTTAGCCCCTATTTCCTCA-TATT 7171391 Query 16303 TCTCAGGTTGCTTAAGAAAAT 16323 ||| || | ||| ||||||| Sbjct 7171390 TCTTTGGATTCTTCAGAAAAT 7171370 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/271 (69%), Gaps = 9/271 (3%) Strand=Plus/Minus Query 16067 ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATC 16126 |||||| |||||||| || | |||| |||| | || | ||| ||| ||| | | Sbjct 7220838 ATCAATTTCATCAAT-AATATAATGCTAGGTTCACATTTCCTAGCTTCTTGAAATAATTT 7220780 Query 16127 CCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 || ||| |||| || || |||||||||||||| |||||||| | || | ||| || Sbjct 7220779 CCT--CACTCTTGAAGCTCCAACACCAACAAACATTTCCACAAATTCTGAACCAGAA-AT 7220723 Query 16185 TGGATGAAGGGG-ACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || ||| || ||| | ||||||| ||| | ||| || |||||||||||||| | Sbjct 7220722 TGATAGAAATGGCACACCAAATTCACCAGCAGTAGCTTTTGCAAGAAGAGTCTTACCAGC 7220663 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCCAAAGTATC 16302 ||| || || | || ||||||||| | |||| || || || | |||| | ||| Sbjct 7220662 ACCAGGAGGTCCAACAAGAAGGGCACCTTTTAGAATTTTAGCACCTATTTCCTCA-TATT 7220604 Query 16303 TCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 ||| || | ||| | ||||| ||||| ||| Sbjct 7220603 TCTTTGGATTCTTCAAAAAATGCACAAACTC 7220573 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 ||||||||||||||||| || | |||| ||| | || | ||| ||| ||| | | Sbjct 7036921 GCATCAATCTCATCAATAAATATAATGCTAGGTGCACATTGCCTAGCTTCTTGAAATAAA 7036862 Query 16125 TCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 || ||| |||| | || |||||||||||||| |||| ||| | || | ||| Sbjct 7036861 CTCCT--CACTCTTGAAGGTCCAACACCAACAAACATTTCCATAAAATCTGAACCAGAA- 7036805 Query 16183 ATTGGATGAAGGGG-ACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 |||| ||| || ||| |||||||| ||| | ||| || ||||||||||| || Sbjct 7036804 ATTGATAGAAATGGCACACCCGATTCACCAGCAGTAGCTTTTGCAAGAAGAGTCTTTCCA 7036745 Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCCAAAGTA 16300 || || || ||| | || ||||| ||| |||||| || || || | |||| | || Sbjct 7036744 GTGCCAGGAGGTCCCACAAGAAGGGCTCCTTTTGGAATTTTAGCACCTAATTCCTCA-TA 7036686 Query 16301 TCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | ||| || | ||| ||||||| |||| ||| Sbjct 7036685 TTTCTTTGGATTCTTCAGAAAATGGACAAACTC 7036653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620697815177120