Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq922 122 1e-22 seq877 86.0 7e-12 >seq922 Length=8123900 Score = 122 bits (134), Expect = 1e-22 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 |||||||| | || ||||| |||||| |||| | |||||||| | || ||||| Sbjct 2994018 CCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAACCAGGCATTAAACCCCTTTTT 2993959 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 ||||||||||| |||| ||||||||| |||||||||||||| || || |||||||| ||| Sbjct 2993958 TTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAGATACCTTCAACACAGGCAAAA 2993899 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGT 119688 || | | | ||| ||||||| | ||| | || ||| || || ||||||| Sbjct 2993898 GCAATCAACCTCTCTGCAAAAGATTCAGAGGAATTGATCCATTTTAGCGCCCAGT 2993844 >seq877 Length=763677 Score = 86.0 bits (94), Expect = 7e-12 Identities = 125/176 (71%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 158491 GCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCGGGGGTCATCGAT 158550 ||||||||||| |||||||| |||||||| ||| | || || || || ||||| ||| Sbjct 369693 GCACCTCGTTCTGGTTTGGCATGGAAGCACTCTATTGATGTGGGAGCTGGAGTCATTGAT 369752 Query 158551 CCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACAAGGACTTTGAG 158610 ||||||| | || || ||| |||| ||||| ||| |||| |||||| | Sbjct 369753 GCTGATTACAGAGGCCCTGTTGGTGTCATTCTATTCAACCATTCTGACACTGACTTTCAA 369812 Query 158611 GTTAAGAAGGGTGATCGCATCGCACAGCT--TGTTCTAGAACGTTGTGAGACGCCA 158664 || | | |||||||| || |||||||| | || |||| |||||| || ||| Sbjct 369813 GTCTACACTGGTGATCGGATTGCACAGCTCATAATCGAGAAAATTGTGACACCCCA 369868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588933696798800