Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2758 131 2e-25 seq1199 89.7 6e-13 >seq2758 Length=2366178 Score = 131 bits (144), Expect = 2e-25 Identities = 203/286 (71%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||||||||| || || ||||| |||||| | || || || || || Sbjct 1358545 ATCAAACCGCCCTGGACGAAGCAGGGCAGAGTCAAGAATATCAGCACGGTTAGTTGCAGC 1358486 Query 9254 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || |||| ||||| |||| | || | ||||||||||| || ||||| || || || Sbjct 1358485 TATCACAATGATACCCGTGTTGCCTT--CGAAACCATCCATTTCAGTCAAGAGCTGATTG 1358428 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | ||||| |||| ||||||||| | | | | | || || | | |||| | || | Sbjct 1358427 AGTGTTTGCTCCCTCTCATCATTCCC--ACCTCCAATTCCCGCCCCCCTTTGCCTACCAA 1358370 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||||||||||| || || || || || |||||| || | | |||| Sbjct 1358369 CTGCATCAATCTCATCAACAAACACGATGCAAGGAGCATTTTCCTTTGCTTTCTTGAAGA 1358310 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 | || || ||||| || |||||||| ||||||||||| ||||| Sbjct 1358309 GGTCACGGACCCTAGAAGCACCCACACCCACAAACATCTCAACAAA 1358264 >seq1199 Length=7341449 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 107177 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTG 107236 ||||| |||| |||||| | |||||| | || ||| ||||| || ||| |||||| Sbjct 5064663 GGTGTCCCAGAATTGAACAAGGTTGGAGAAGCATGAGTGAACCAACGTTGAGACATCAAA 5064722 Query 107237 TCGTATGTCTCCAAGA-CAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 | |||||| | ||| ||||||||||||||||| ||| ||||| | || || | ||| Sbjct 5064723 TGATATGTC-CTTAGAGCAGAATCAATGTCTTCCTTGTGAATGCCAACAGCTACTCTCAT 5064781 Query 107296 AAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTT-GAAGAT-AGCTCTTC 107353 ||||| | ||| || | || | | | || | || | || |||||| || || | Sbjct 5064782 CAACATATGTTGAGGCCTCTCAACAACCTTTCC-TTGAACTTTTAGAAGATAAGATC-GC 5064839 Query 107354 TCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || || ||||||| ||||| ||| || | ||| ||||||| Sbjct 5064840 TCGAGAGTTTTGAACCCAAAATAATCATAGTCAAAGTCCCG 5064880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589938424629040