Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1199 203 7e-47 seq461 181 2e-40 seq3426 179 8e-40 seq21 165 2e-35 seq2419 143 6e-29 seq5571 116 8e-21 seq5 114 3e-20 seq3001 113 1e-19 seq3275 95.1 3e-14 seq385 89.7 1e-12 >seq1199 Length=7341449 Score = 203 bits (224), Expect = 7e-47 Identities = 178/222 (80%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||| ||| || |||||||| |||||||| || ||||||||||| || || || Sbjct 1127646 TCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCTAGGGT 1127705 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||| Sbjct 1127706 TCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGTATGCC 1127765 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||| || ||||| |||||| || || || || || || || || || ||||| Sbjct 1127766 CTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACCTCAAG 1127825 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAt 195140 |||| ||||| || || | ||||||||||| | ||||| Sbjct 1127826 AGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCAT 1127867 >seq461 Length=5900637 Score = 181 bits (200), Expect = 2e-40 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || || ||||| |||||||| || || ||||||||||| ||||| || ||| Sbjct 2470309 AGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTC 2470250 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || || ||||| || | || |||||||| || ||||| || Sbjct 2470249 CCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCC 2470190 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| |||||||| |||||| || |||||||| || || || ||||| ||||||||| Sbjct 2470189 TTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCACCTCAAGGGTA 2470130 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAt 195140 | |||||||| || | ||| || || || | ||||| Sbjct 2470129 ATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCAT 2470092 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| || || ||||||||||| || ||||| || ||||| || | ||| Sbjct 2470066 TGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCCTCCAATTGC 2470007 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || | ||| ||||| ||||| |||||||| ||||| ||||| ||| Sbjct 2470006 TTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTT 2469947 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || ||||||||||| || || || || | || | |||||| || ||| Sbjct 2469946 GACTTCACATTATCGATGGTGTCCGAGCTCTCAACCTCCAATGTGATCGTCTTACCAGTC 2469887 Query 195118 AAAGTTTTTACGAACACTTGCAt 195140 | || || || || | |||||| Sbjct 2469886 AGGGTCTTGACAAAAATTTGCAT 2469864 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| || | |||||||| || |||||||| ||||| || || || || |||||||| Sbjct 2469172 CTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGTA 2469113 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || | ||||| || || || || | || || ||||| || ||||||||| Sbjct 2469112 CGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCT 2469053 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||| || || ||| ||| || || || |||||||| || || || || || ||| Sbjct 2469052 TCCTTGTCCTGTATCTTTGCCTTTACATTGTCTATGGTGTCAGAGCTCTCAACCTCCAGG 2468993 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAt 195140 || | || || || || | ||||| || || | ||||| Sbjct 2468992 GTGATGGTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 >seq3426 Length=3004207 Score = 179 bits (198), Expect = 8e-40 Identities = 174/224 (78%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||||| ||| || |||||||| || || || || ||||||||||| || || || Sbjct 2139215 TCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCTAGTGT 2139156 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || |||||||| ||||| || ||||||||||| || ||||| || ||||| || ||||| Sbjct 2139155 TCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGGATGCC 2139096 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||| || || || |||||| || |||| || || || || || || ||||| Sbjct 2139095 CTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACCTCAAG 2139036 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAttt 195142 ||||| ||||| || || | ||||| ||||| | ||||||| Sbjct 2139035 GGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTT 2138992 >seq21 Length=3941259 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| |||||||| || ||||| || || ||||| || || ||||| || ||||| Sbjct 1372419 GTGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCAAGCTG 1372360 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || || || || | ||| ||||| || ||||| || || |||||||||||||| Sbjct 1372359 TTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAATTTT 1372300 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| ||||| || || || ||||| || || ||||||| ||||| || || Sbjct 1372299 AGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTTGCCAGT 1372240 Query 195117 CAAAGTTTTTACGAACACTTGCAt 195140 ||| || || ||||| | |||||| Sbjct 1372239 CAAGGTCTTGACGAAAATTTGCAT 1372216 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| |||||||| || || ||||| ||||||||||| | ||||| ||||| ||| Sbjct 1372190 TGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTCGAGTTGC 1372131 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || |||| ||| ||||| |||||||| || || ||||||||||| || Sbjct 1372130 TTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTG 1372071 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| ||||| ||||| || || || || || || |||| ||||| || || Sbjct 1372070 GCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTCCCAGTG 1372011 Query 195118 AAAGTTTTTACGAACACTTGCAt 195140 | || || || || | ||||| Sbjct 1372010 AGGGTCTTGACAAAGATCTGCAT 1371988 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| ||||| || | || || |||||||| || || |||||||| |||||||| || | Sbjct 1372661 GAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCG 1372602 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || ||||| || || || || ||||| | || ||||| || || || || || Sbjct 1372601 GCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTC 1372542 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||||||||| ||| ||||| ||||| || ||||| || || || || | ||| Sbjct 1372541 CTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACCTCCAAGGT 1372482 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAt 195140 || ||||| || ||||| ||||| || || | |||||| Sbjct 1372481 AATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| || || |||||||| || || || || | ||||| ||||||||| Sbjct 1372873 TGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCATCCTCGAGCTGC 1372814 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| | | || || || || ||||| || || |||||||| || || Sbjct 1372813 TTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCTTGGATCTTC 1372754 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || |||||||| ||||| |||||||||||||| |||| ||||| || ||| Sbjct 1372753 GTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATGGTCTTGCCGGTC 1372694 Query 195118 AAAGTTTTTACGAACACTTGCAtt 195141 | || || || || | |||||| Sbjct 1372693 AGGGTCTTAACAAAAATCTGCATT 1372670 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| ||||| ||||||||||| ||||||||||| ||||| || || || Sbjct 1371963 GTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTGCCATCCTCAAGTTG 1371904 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| || | || || || || || || || || || || ||||| || Sbjct 1371903 CTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCCTTATCCTGAATCTT 1371844 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || || |||||||| || || || ||||| |||| ||||| || || Sbjct 1371843 GGCCTTCACATTATCGATAGTGTCCGAGCTCTCGACCTCAAGAGTAATGGTCTTCCCAGT 1371784 Query 195117 CAAAGTTTTTACGAACACTTGCAt 195140 | || || || || | ||||| Sbjct 1371783 GAGGGTCTTGACAAAGATCTGCAT 1371760 >seq2419 Length=5026 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| ||||| || ||||||||||| | || | ||||| ||| Sbjct 4980 ACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCCAATGTACGGCCATCCTCG 4921 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | || || ||||| || || || || || || ||||| Sbjct 4920 AGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGGGGGATTCCCTCCTTATCTTGG 4861 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || |||||||||||||| || || || ||||| |||| ||||| Sbjct 4860 ATCTTAGCCTTAACATTGTCAATGGTGTCCGAGCTCTCAACCTCAAGAGTAATAGTCTTG 4801 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAt 195140 ||||| | || || || || | ||||| Sbjct 4800 CCTGTAAGGGTCTTAACAAAGATCTGCAT 4772 >seq5571 Length=10537363 Score = 116 bits (128), Expect = 8e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| || || || |||||||| ||||| || | ||||| ||| Sbjct 10537238 ACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGACCATCCTCG 10537297 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | ||| ||||| || || |||||||| ||||||||| Sbjct 10537298 AGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCGGGGGGGATGCCTTCCTTGTCTTGA 10537357 Query 195052 AT 195053 || Sbjct 10537358 AT 10537359 >seq5 Length=3793322 Score = 114 bits (126), Expect = 3e-20 Identities = 101/125 (81%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| || || || |||||||| ||||| || | ||||| ||| Sbjct 125 ACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGACCATCCTCG 66 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | ||| ||||| || || |||||||| ||||||||| Sbjct 65 AGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTC-GGGGGGATGCCTTCCTTGTCTTGA 7 Query 195052 ATTTT 195056 || || Sbjct 6 ATCTT 2 >seq3001 Length=2574463 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 |||| ||||| ||||| ||||| || || || ||||||||||| |||||||||| |||| Sbjct 511756 CTCATCACAAGATGAAGGGTGGATTCCTTCTGTATATTGTAATCAGCAAGAGTTCGCCCA 511697 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 || || || ||||| || || || || |||| ||||||||| |||||||| || || || Sbjct 511696 TCATCTAGTTGCTTGCCAGCAAATATCAGTCTTTGTTGGTCAGGAGGAATTCCCTCCTTA 511637 Query 195046 TC 195047 || Sbjct 511636 TC 511635 >seq3275 Length=3666727 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 ||||| ||||| | ||| ||| | || || || ||||||||||| | |||||||| |||| Sbjct 2666520 CTCAACACAAGATAAAGGGTGCATTCCTTCTGTATATTGTAATCAGTAAGAGTTCACCCA 2666579 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 || | || ||||| || || || || |||| |||||||| |||||||| || || || Sbjct 2666580 TCCTGTAGTTGCTTGCCAGCAAATATCAGTCTCTGTTGGTCAGGAGGAATTCCCTCATTA 2666639 Query 195046 TC 195047 || Sbjct 2666640 TC 2666641 >seq385 Length=5744721 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 125524 CTTCCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAAA 125583 ||||| ||||| || || || |||||||| || || |||||||||| |||||||||| Sbjct 224513 CTTCCTAAGAAGCATGGAAGAGGAGGACAGTCAGCCTTGCGTTTTGCCAGACTTCGAATG 224454 Query 125584 GAAAAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCAACTCAAT 125632 || ||| | ||||| ||| | |||||| || ||| ||||||||||| Sbjct 224453 GAGAAGCGCCACAATTATGTTAGGAAAACTGCTGAGCTTGCAACTCAAT 224405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109399919271182