Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq21 105 4e-18 seq461 96.9 2e-15 seq3426 89.7 3e-13 >seq21 Length=3941259 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| | ||| | || |||| || || || || || ||||| Sbjct 1372178 TCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTCGAGTTGCTTACCAGCAAAA 1372119 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||||| ||||||||| | || | ||||||||||| |||||| || ||| Sbjct 1372118 ATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTG 1372059 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || |||| || ||||| || || ||||| ||||| ||| Sbjct 1372058 TCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACA 1371999 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1371998 AAGATCTGCAT 1371988 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || |||||||| || |||||||| | |||| | | | |||| || Sbjct 1372424 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCA 1372365 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| ||||| | ||||||||| | || | ||||||||||| | Sbjct 1372364 AGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGA 1372305 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || ||| | || | || | ||||| || | ||| ||||| || Sbjct 1372304 ATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTTG 1372245 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||||| || || || ||||| Sbjct 1372244 CCAGTCAAGGTCTTGACGAAAATTTGCAT 1372216 >seq461 Length=5900637 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | ||| | || | ||| | |||| || || || ||||||||||| | | Sbjct 2469178 CCACCCCTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTATAGTCAGCA 2469119 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||| || ||||| ||||| |||| || |||||||| | || Sbjct 2469118 AGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGA 2469059 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| || || |||| | ||| | |||||| Sbjct 2469058 ATGCCTTCCTTGTCCTGTATCTTTGCCTTTACATTGTCTATGGTGTCAGAGCTCTCAACC 2468999 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| |||||||| || || || || || ||||||||||||||| Sbjct 2468998 TCCAGGGTGATGGTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCATA 2468951 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | ||| | || | ||| | |||| || ||||| |||||||| || | | Sbjct 2468950 CCACCCCTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCA 2468891 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | ||| |||| |||| || ||||| ||||| || | || |||||||| | || Sbjct 2468890 AGTGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGG 2468831 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| ||||| || || || | ||||| ||| | ||| Sbjct 2468830 ATGCCTTCCTTGTCCTGGATCTTTGCCTTTAC--AT--TGTCGATGGTGTCAGAGCTCTC 2468775 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| || ||||| ||||| || | ||||| |||||||||||||| Sbjct 2468774 TACCTCGAGAGTGATGGTCTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 2468724 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || | |||| | | |||| || ||||| || || ||||| Sbjct 2470282 TCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAG 2470223 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| ||| ||| ||||| Sbjct 2470222 ATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTTCGCCTTGACATTG 2470163 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| ||||| ||||| || |||||||| ||| Sbjct 2470162 TCAATGGTATCGGAGCTCTCCACCTCAAGGGTAATGGTCTTTCCAGTAAGAGTCTTAACA 2470103 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 2470102 AAAATCTGCAT 2470092 Score = 82.4 bits (90), Expect = 5e-11 Identities = 154/221 (70%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 ||| | ||||||||| | ||| || || |||||||| ||||||| || | || | Sbjct 2469851 CCTGAGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACC 2469792 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| || | || || || || || || || | || ||||| | || | ||| ||||| Sbjct 2469791 ATCCTCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTT 2469732 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGG 34941 ||| ||||| ||||| || |||| || | ||| || |||||| || | || Sbjct 2469731 GTCCTGGATCTTTGCCTTGAC--AT--TATCAATGGTATCCGAGCTCTCAACCTCCAGGG 2469676 Query 34942 TTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| ||||| || || || || ||||||||||||||| Sbjct 2469675 TAATGGTCTTTCCAGTCAGGGTTTTAACAAAGATCTGCATA 2469635 >seq3426 Length=3004207 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | |||| ||||| |||| || ||| ||||| || || || || | Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || |||| |||| || |||||||| || || || || || |||||||| ||| | || Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| ||||| ||||| | | | ||| | ||| || Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACC 2139041 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 || | ||| ||||| || ||||| || || ||||| ||||||||||| |||| Sbjct 2139040 TCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTTCG 2138989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324610866111888