Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq922 244 1e-59 seq1199 93.3 5e-14 seq557 87.8 2e-12 >seq922 Length=8123900 Score = 244 bits (270), Expect = 1e-59 Identities = 591/887 (67%), Gaps = 17/887 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| ||||| |||| || || |||||||||||||| || |||| | ||| || | Sbjct 2994330 TTTTGGTATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAGTGAAATGAGT 2994271 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| |||||||||| |||| || ||| ||||| | | || || | | Sbjct 2994270 TCCATCCAATCAAATGGGTTTTGAACCCCATAGATTTTATCACACCCCAAAGCATTCAAC 2994211 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 || ||||| || ||||||| || || | |||||| || | |||||||| | || Sbjct 2994210 AGCCTATCAGCCACAAATTCGATGTACTGGCTCATCAGATTGCCGTTCATTCCCACTAGA 2994151 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | || | ||||| || ||||||| ||||| | ||| | || || ||| Sbjct 2994150 GCACAGGGCAAGGCATCACAAACAAATTCTCTCTCTATCTCTACAGATTCCCTTACTATA 2994091 Query 18910 GATACAACTCTATCTTCATTAGGAG-----GGTATAGAAGATGTTTAAACATCAAACATG 18964 | ||| || | || | |||| ||| |||||||| | | | | || | Sbjct 2994090 TTTTGAACGCTTTGTTGAG--GGAGCTTGTGGTTTAGAAGATCAT---AGAGAAGGCAAG 2994036 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 |||||||||| |||| || || ||||| || | ||||||||| || |||||||||| Sbjct 2994035 CAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAACCAG 2993976 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATAC 19084 |||| | || |||||||||| ||| ||||| ||| ||| ||||||||||| |||| Sbjct 2993975 GCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAGATAC 2993916 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCC 19144 |||| || |||||||||| | || ||| || || | ||| || |||| Sbjct 2993915 CTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAA---GATTCAGAGGAATTGATCC 2993859 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||| || ||||| || || || || ||||| || | || || | || | || | Sbjct 2993858 ATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAACA 2993799 Query 19205 GATACATACG-CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 || | | |||| | ||| || | || | || | ||| | |||||||| || Sbjct 2993798 -ATCGACTCTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATCTCA 2993740 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || || || ||||| || || ||||| || || || ||| || || |||| | || Sbjct 2993739 GAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACTTGA 2993680 Query 19324 ACTTCACTACAA-AATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 || || || || |||| | | | |||||| ||||| |||||| ||||||||| Sbjct 2993679 ACCTC-CTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCAAA 2993621 Query 19383 AAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATT 19442 || || | ||||| | || || |||||||| | || || | | || ||| | | Sbjct 2993620 GAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTGCTG 2993561 Query 19443 AATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 || |||| ||| | ||| || |||||| | ||||| ||||| ||||||||||| ||||| Sbjct 2993560 AAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTTATA 2993501 Query 19503 CATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTAT 19549 ||| | ||| || | |||||| ||| ||||| || ||||| || Sbjct 2993500 CATCTCCCAAATTTGGGGATATTTTATGGGAAACATGCAAAATCGAT 2993454 >seq1199 Length=7341449 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||| | || | |||| || |||||| || || ||| Sbjct 5064283 CCCCCTTGATCGACATAACGAGCAGTGTCATTGAACACTCGTAGCATTGGAACTATCCCA 5064342 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| || || | | |||||| |||||| | ||| Sbjct 5064343 TTAGATGTGCCATTTGTACCACGAATGTAGCTACTAGTAGCTCGAATATTATGGACAGAA 5064402 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || ||||| ||| || | ||||||| || ||||||||||| || Sbjct 5064403 ACACCAATGCCTCCTGCTGATTTGCTAATAACAGCACACTCCTTGAGGGTATCATATATA 5064462 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || || ||||| ||| ||||| Sbjct 5064463 CCCTCAATGCTATCTTCTTTCATA 5064486 >seq557 Length=6368207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 18950 TAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAG 19009 || ||| |||||| ||||||||||||||||| ||||| ||||| || | |||||| | Sbjct 1405737 TATACAACAAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCG 1405796 Query 19010 AAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 | || ||||| |||||||||| |||| ||||| | ||| || || Sbjct 1405797 AGAAGGTTAATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAAT 1405842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562068426535440